Streptococcus rubneri: LPB404_07795
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Entry
LPB404_07795 CDS
T09579
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
srun
Streptococcus rubneri
Pathway
srun03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
srun00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LPB404_07795 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
srun03019
]
LPB404_07795 (rnr)
03016 Transfer RNA biogenesis [BR:
srun03016
]
LPB404_07795 (rnr)
Enzymes [BR:
srun01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
LPB404_07795 (rnr)
Messenger RNA biogenesis [BR:
srun03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LPB404_07795 (rnr)
Transfer RNA biogenesis [BR:
srun03016
]
Prokaryotic type
tRNA degradation factors
LPB404_07795 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
CSD2
S1
RNase_II_C_S1
S1CSD-TOTE-2
S1_RRP5
CSD
HTH_DeoR
OB_HELZ2
Motif
Other DBs
NCBI-ProteinID:
QXW96318
LinkDB
All DBs
Position
complement(1545115..1547475)
Genome browser
AA seq
786 aa
AA seq
DB search
MKSKIIDYLKQEGKAQVDQLAQAIGSTDAKGFRELIKTISLMERRRQLTFEENGYLSLLD
AKPKGTITVKGIFHAHKSGFGFVSLEGEEEDLFIGRNDVNHAIDGDTVEVVITKVADRQK
GTAAEGKIIDVLEHSLQTVVGQIVLDEEKPKYAGYIVSKNQKISQRIYVKKPALQLEGTE
VLKVAIEQYPSRKHNYFVATVQDVVGHVTDPGIDVLEVLESMDIVSEFPEAVLKEAESIP
DKPSEKDMEGRLDLRDEIIFTIDGADAKDLDDAVHIKRLEGGNYELGVHIADVSYYVTEG
SALDKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQVDRLTQSAIMEIDERGRVLRYQ
ITQTVIKTTFRMTYSDVNEIIAGDQEKREEYQAIVPSIEAMVGLHQILEGMREKRGALNF
DTSEAKILVNPQGKPVDIVLRQRGIAERMIESFMLIANETVAEHFAKRKLPFIYRIHEEP
KAEKVQKFIDYASSFGIPIYGTASSMSQETLQDIMKKVEGEPYADVLSMMLLRSMQQARY
SEHNHGHYGLAAEFYTHFTSPIRRYPDLLVHRMVREYGKDSEVASHFEQVIPDIASQSSS
RERRAIDAEREVEAMKKAEYMEDYVGEEYDALVSSVVKFGLFVELPNTVEGLIHITTLPG
FYHFNERDLTLRGEKSGVTFRVGQEIRIRVERADKMTGEIDFSYIPSELDLIEKGHKASG
RKEGGPSSKRRPSKKEGERKQGGFRDNKRKHSPKDKKKKSKKPFYKEVAKKGVKHGKGRG
KGRRTK
NT seq
2361 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagtaaaattattgattatttaaaacaggagggaaaagctcaggttgatcaattg
gcacaagccattgggagtacagatgccaaaggttttcgtgaactgattaagaccatttcg
ctgatggagcgacgtcgtcaactaacctttgaagaaaatggctatttaagtctccttgat
gctaaaccaaaagggaccattactgtgaaaggaattttccatgctcataagagtggcttt
ggttttgtcagcttagagggggaagaagaggatctctttattggacgaaatgatgtcaac
catgctattgatggggatacagttgaagttgtcatcaccaaggtagctgatcgccaaaag
gggacagcggcagaggggaaaatcattgatgtcttggagcatagtctccaaacagttgtc
ggccagattgttttggatgaagaaaaaccaaagtatgcaggctacatcgtttcaaagaat
caaaagattagccaacggatctacgtgaaaaagccagccctgcaattggaggggaccgaa
gttctcaaggttgccattgaacagtatccgagtcggaagcacaactactttgtggccact
gttcaagatgtggttgggcatgtcacagatcctggaatcgatgtcttggaagtcctggag
tccatggatatcgtctcagaatttccagaagcagtcctcaaagaagcagaaagcattcca
gacaagcctagtgagaaagatatggagggacgtttggaccttcgagatgaaatcatcttt
accattgatggtgccgatgccaaggacttggatgatgcggttcacattaagcgcttggaa
ggcggaaattatgaacttggagttcatattgcggatgtctcatattatgtgaccgaaggt
tctgccttggataaggaagctctcaaccgagcgacctctgtctatgtaacagatcgagtt
gttcccatgttaccagagcgactttccaatgggatttgttccctaaatcctcaagtggat
cgcttgacccaatcagccattatggagattgacgagcgtggtcgggtccttcgttaccag
attacccaaacagttattaaaacgaccttccggatgacctatagtgatgtcaatgagatc
attgcaggagaccaagagaagcgtgaggaataccaagctattgttccaagtattgaagct
atggttggccttcatcagatcttagaaggaatgcgggaaaagcggggagcccttaacttt
gataccagtgaagctaaaatcctggtcaatcctcaaggaaaaccggtcgacatcgtcttg
cgtcaacggggaattgcagaaaggatgattgaatcctttatgctaattgccaatgagaca
gtggctgagcattttgccaaacgaaaacttcccttcatttaccggattcacgaagaacct
aaagcagagaaggtgcaaaagtttatcgattatgcctctagctttggcatacctatttat
gggacagctagttcgatgagtcaggaaaccttgcaggatatcatgaagaaggtagaaggg
gaaccttatgctgatgttctgtccatgatgttgcttcgttccatgcagcaggcgcgctat
tccgagcacaaccatggtcactatgggctagctgcggagttctatactcactttaccagt
ccgattcgccggtatccagacttattagtccaccgtatggtgcgagagtatggaaaagat
tctgaagtggctagtcattttgaacaggttattccagatatcgctagccaatcctctagt
cgggaacgccgcgctattgatgcggagcgagaagtagaagccatgaagaaggcagagtat
atggaggactatgttggcgaagagtacgatgctctggtatccagtgtcgtcaagtttgga
ctctttgttgaacttccaaatactgtagaaggtttgatccacatcaccaccttacctggt
ttttatcattttaatgagcgtgatttaaccttgcgaggggaaaaatcaggcgtcaccttc
cgagttggtcaagagatccgaattagggttgaaagagcggataagatgactggagaaatc
gatttttcttatatcccaagtgagctggatctgattgaaaaaggccataaagcttctggg
cgtaaggaaggaggtccatcttctaaacgccgtccttccaagaaagaaggagagcgaaag
caaggaggctttagagataacaagcgcaagcattctccaaaagacaagaagaaaaagagt
aagaaacctttttacaaagaagtagcaaagaaaggagtcaagcatggcaaagggcgaggg
aaaggtcgtcgcacaaaataa
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