Streptococcus rubneri: LPB404_09685
Help
Entry
LPB404_09685 CDS
T09579
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
srun
Streptococcus rubneri
Pathway
srun03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
srun00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LPB404_09685
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
srun03019
]
LPB404_09685
Messenger RNA biogenesis [BR:
srun03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LPB404_09685
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
RNase_J_b_CASP
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
QXW96669
LinkDB
All DBs
Position
complement(1923827..1925488)
Genome browser
AA seq
553 aa
AA seq
DB search
MSNIKLITLGGVRENGKNLYIAEVNDSIFVLDAGLKYPENEQLGVDVVIPNMDYLFENSD
RIAGVFLTHGHADAIGALPYLLAEAKVPVFGSELTVELAKLFVKSNDSVKKFNDFHVIDA
NSEIDFGGTVVSFFQTTHSIPESLGIVIKTPEGNIVYTGDFKFDQTASESYATDFGRLAE
IGREGVLALLSDSANADSKIQVASEQEVGDEILDTIGDWDGRVIVAAVASNLSRIQQVFD
AAAETGRRVVLTGFDVENIVRTGIRLNKLSLANEKLLIKPKEMSRFEDHELIILETGRMG
EPINGLRKMSIGRHRYVEIKDGDLVYIVTTPSIAKEAVMARVENMVYQAGGVVKQITQSL
RVSGHGNARDLQLMINLLRPNYLFPIQGEYRELDAHARLAMEVGILPENIFIPKKGTIME
YDNGDFVPAGSVSAGDVLIDGNAIGDVGNVVLRDRKVLSEDGIFIVAITVNRRERRIISK
AKVHTRGFIYVKKSRDILRESAEIVNQSVEEYLAQDSFDWGELKGAVRDSLAKYLFDQTK
RRPAILPVIMEVR
NT seq
1662 nt
NT seq
+upstream
nt +downstream
nt
atgagtaacattaagttgattactttaggtggagtccgtgaaaacgggaaaaacctctac
atagctgaagtaaatgactctatttttgttttggatgctggactcaagtatccagaaaat
gagcaactaggggtcgatgttgttattcccaacatggactacctctttgagaatagcgat
cgtatcgcaggagtctttttaacgcacgggcatgcggatgccatcggagctcttccctat
cttttagcggaagctaaagttcccgtatttgggtcggagttgaccgtcgagttggccaag
ctctttgtcaagagcaatgacagtgtcaagaagttcaatgacttccatgtgatcgatgcc
aattcagaaattgattttggaggaactgttgtttccttcttccagaccacccactccatt
ccagaaagtttaggaattgtcatcaagactcctgaggggaatatcgtctatacaggagac
ttcaagtttgaccaaacagctagtgagtcttatgcgacagattttggtcgtttagcagag
attggtcgtgaaggggtgttggcgctcctgagtgattctgccaatgcagatagcaagatt
caagttgctagcgagcaagaagttggagatgaaatcctggataccattggggactgggat
ggccgtgtcattgttgctgcggttgctagtaacctatcacggatccagcaggtctttgac
gcagctgcagagacagggcgtcgggttgttttgactggatttgacgtagaaaatatcgtc
cggacagggattcgcttaaataagctatctttggccaacgaaaaattattgatcaagcca
aaagaaatgtctcgttttgaggatcatgaattgattattcttgaaactggacgtatgggt
gagccgatcaacggacttcgtaagatgtccattggccgtcaccgttatgtcgaaatcaag
gatggggacttggtctatatcgtaacgaccccatctatcgccaaagaagcggttatggca
cgtgtagaaaatatggtctatcaagcaggcggagtagtgaaacaaattactcaaagcttg
cgtgtatcaggacatggaaatgcgcgtgatttgcagttgatgatcaacctccttcgtccc
aactatctgttcccaatccaaggggaataccgcgaattggatgcccatgcacggcttgct
atggaagtggggattttgcctgaaaatatcttcattccgaaaaaaggcaccatcatggaa
tacgacaatggcgacttcgttcctgctggcagtgtctctgctggagatgtcctcattgat
gggaatgccattggagatgttggaaatgttgttctccgtgaccggaaagtcctttcagaa
gatgggatctttattgtagctattacagttaaccgtcgtgagagacgcattatctcgaag
gcaaaagttcacacccgtggctttatctatgtgaagaagagtcgtgatatcttgcgcgaa
agtgcagagattgtcaaccaaagtgtggaagaatacttggctcaggatagcttcgattgg
ggtgagctcaagggtgctgttcgtgatagtttggctaagtacctctttgaccagaccaaa
cgtcgaccagctatcttgccagtaatcatggaagtacgctag
DBGET
integrated database retrieval system
