Streptomyces reticuli: TUE45_03204
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Entry
TUE45_03204 CDS
T04246
Symbol
rne
Name
(GenBank) Ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
srw
Streptomyces reticuli
Pathway
srw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
srw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TUE45_03204 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
srw03019
]
TUE45_03204 (rne)
03009 Ribosome biogenesis [BR:
srw03009
]
TUE45_03204 (rne)
Enzymes [BR:
srw01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
TUE45_03204 (rne)
Messenger RNA biogenesis [BR:
srw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
TUE45_03204 (rne)
Ribosome biogenesis [BR:
srw03009
]
Prokaryotic type
rRNA processing factors
TUE45_03204 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
CUW28468
LinkDB
All DBs
Position
I:complement(3705730..3710304)
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AA seq
1524 aa
AA seq
DB search
MLEPTEPQEGSELNTPSDTLPPRRRRRAASRPAGPPAAAAEAPVEVTAPAIPAAEADEVV
EVTEDTEVPEAAEAAEVFQAQAETPAAAEAAPAARPRRRATRRVSAPAGAPASAEAAETV
VPAAAGEPEQAVVPEAGAVVVGEEAAPRRVRRRATRSVSAPTAASAETAAAEAGVTAEAS
ATEAPAAEAPAAEAPAAAEAAPAARPRRRATRRVSAPAGAPASAEAAGAAETVVPAAEAA
APAEAVTEAPAAEEAAAEEAAPAARPRRRATRRASAPAGAPKAAEEAPAAAAAVEPEAVQ
EAVEAPAEEEAAPRRTRRRATRRVSAPAGTPAAEETAGAGEAEAPAAAAAVEPEAVQEAV
EAPAEEEAAPRRTRRRATRRVSAPAGAPAAEETAGAEAGQTEEPAVTAHTPEVPATTHTT
EPAPATQTPAAAQAEPGAPRRARRRVVRAASGFAAPATPQAGEADAPRPPARPAVAVFQP
PVFTEPQFQTPERAAAEAAAEAAGTEETETEEYAEERVETGARRRRRRRGAAEETRPVEA
AAEEEEEAEEAPESAEDLAEGEEGDETEGAEGFEESGSRRRRRRGGRRRRRGDAAEGESG
EGVDADAEELAAEQAAQDAEDTAEQEEEDAEDAHSEESGGSSTSSRRRRRRRRRAGDTGV
DTEPSADDPERTVVKVREPRKPSEPSDEVQSIKGSTRLEAKKQRRREGREQGRRRVPIIT
EAEFLARREAVERVMVVRQHGDRTQIGVLEDGVLVEHYVNKEQSTSYVGNVYLGKVQNVL
PSMEAAFIDIGKGRNAVLYAGEVNFEALGMANGPRRIESALKSGQSVLVQVTKDPIGHKG
ARLTSQVSLPGRYLVYVPEGSMTGISRKLPDTERARLKSILKKIVPEDAGVIVRTAAEGA
SEDELRRDVERLQAQWEDIQKKAKNGNAPTLLYGEPDMTVRVVRDIFNEDFSKVIVSGDD
AWQTIHGYVSHVAPDLAGRLSKWTSEVDVFATYRIDEQLAKALDRKVWLPSGGSLVIDRT
EAMVVIDVNTGKFTGQGGNLEETVTRNNLEAAEEIVRQLRLRDLGGIIVIDFIDMVLESN
RDLVLRRLLECLGRDRTKHQVAEVTSLGLVQMTRKRVGQGLLESFSETCVHCNGRGVIVH
LDQATANGGGGKRKKRGRGAEAPEPVHEHVHETAAVAVETGEAVEPEVETAAEVAAEAAE
PVALPAPEFAPDEELYSSVAEAEAAATRGRTRRRASRRASAPAGAPKAKAEKAERAPKAE
KAEKAEKAEKAAEAEVPAEAEVPTAQEVTAEEAAARPVRPEPAAEALAEPAAVEDQVVPA
PQAEAPAAEEAAPKGRTRRRATRKVSAPAGSPEGAEAAVVTVPEAAPAAEAPAEQPAPVA
EAPAGEPAEAEKPVAAETAAAPARPRRRAVRKATAPTAPEEAAVVVVPSAPAAEEAPAAE
APEAPAAEVTAEEVAEVTAPAKKATRKTAAKKTAAKKTTAKKTAAKKTAAKKTTAKKATK
TAKTAAAKSTAKKTTTVSTAGDEG
NT seq
4575 nt
NT seq
+upstream
nt +downstream
nt
atgctcgagccgaccgaaccccaagagggttccgaactgaacaccccgagcgacaccctg
ccgccgcgcaggcgtcgccgtgccgcctctcgccccgcgggcccgcccgccgcggccgcc
gaggcgcccgtcgaggtcaccgcgccggccataccggccgctgaggccgacgaggtcgtc
gaggtgaccgaggacaccgaggtccccgaggcggctgaggccgccgaggtcttccaggcc
caggccgaaacgcctgctgccgctgaggccgctccggccgcgcgtccgcgccgccgtgcc
acccgccgtgtgtcggcgcccgccggtgccccggcgtccgccgaggccgccgagaccgtc
gtaccggccgcggccggcgagccggagcaggccgtcgttcccgaggccggcgcggtcgtc
gtcggcgaggaggccgccccgcgccgcgtccgccgccgggccacgcgcagcgtctccgcg
ccgaccgccgcgtccgccgagaccgccgccgctgaggccggtgtgacggccgaggcttcc
gcgacggaggcgccggccgccgaggcgcccgctgccgaggcgcctgctgccgctgaggcc
gctccggccgcgcgtccgcgccgccgtgccacccgccgggtgtcggcgcccgccggtgcc
ccggcgtccgccgaggccgccggggccgccgagacggtcgtcccggccgccgaggccgcc
gcccccgccgaggccgtgacggaggcgcccgccgccgaggaggccgccgccgaggaggcc
gctccggccgcgcgtccgcgccgccgtgccacccgccgggcgtccgcgcccgccggtgcc
ccgaaggccgccgaagaggccccggccgccgctgcggccgtcgagcccgaggctgttcag
gaggccgtggaggctcctgccgaggaggaggccgctccgcgtcgtacgcgtcgccgggcc
acccgccgggtgtccgcgcccgccggtacgcccgcggccgaggagaccgccggggccggc
gaggccgaggcccccgccgccgccgcggccgtcgagcccgaggctgttcaggaggccgtg
gaggctcctgccgaggaggaggccgctccgcgtcgtacgcgccgccgggccacccgccgg
gtgtccgcgcccgccggtgcccccgcggccgaggagaccgccggggccgaggccggccag
acggaggagcccgcagtgaccgcccacaccccggaggtccccgcgaccacgcacaccacc
gagccggcccccgccacgcagacgccggccgccgcccaggccgagccgggcgcgccgcgc
cgggcccggcgccgggtcgtccgcgccgcctccggcttcgccgcgcccgccacgccgcag
gccggcgaggccgacgccccgcgcccgcccgcccgccccgccgtcgccgtcttccagccg
ccggtcttcaccgagccccagttccagaccccggagcgggccgccgccgaagccgccgcc
gaggccgccgggacggaggagaccgagaccgaggagtacgccgaggagcgcgtcgagacc
ggtgcccgccggcgccggcgccggcgtggcgccgccgaggagacccggccggtcgaggcc
gccgccgaggaagaggaggaggccgaggaggcccccgagtccgccgaggacctcgccgag
ggcgaggagggcgacgagaccgagggcgccgagggcttcgaggagtccggctcgcgccgc
cggcgccgccgcggcggtcgccgtcgccggcgcggtgacgcggccgagggcgagtccggc
gagggcgtggacgccgacgccgaggaactcgccgccgagcaggccgcgcaggacgccgag
gacaccgccgagcaggaggaggaggacgccgaggacgcccactccgaggagtccggcggc
tccagcaccagcagccgccgacgccggcgccgccgtcgccgggccggtgacaccggtgtc
gacaccgagccgtccgccgacgacccggagcgcacggtcgtcaaggtccgcgagccgcgc
aagcccagcgagccgtccgacgaggtgcagtccatcaagggctcgacccgtctggaggcc
aagaagcagcgccgccgggaaggccgtgagcaggggcgccgccgcgtcccgatcatcacc
gaggccgagttcctggcccgccgcgaggccgtcgagcgcgtgatggtcgtccgtcagcac
ggcgaccgtacgcagatcggcgtcctggaggacggcgtgctcgtcgagcactacgtcaac
aaggagcagtcgacctcgtacgtcggcaacgtctacctgggcaaggtccagaacgtgctg
ccgtcgatggaggccgccttcatcgacatcggcaagggccgcaacgcggtgctgtacgcc
ggtgaggtcaacttcgaggcgctcggcatggccaacgggccgcgccgcatcgagtccgcc
ctgaagtccggccagtccgtcctcgtgcaggtcaccaaggacccgatcgggcacaagggc
gcgcgtctgaccagccaggtctccctgccgggccgctacctcgtgtacgtccccgagggc
tccatgaccggcatcagccgcaagctgcccgacaccgagcgggcccgcctgaagtccatc
ctcaagaagatcgtccccgaggacgcgggcgtcatcgtgcgcaccgccgccgagggcgcg
agcgaggacgagctgcgccgggacgtcgagcggctgcaggcgcagtgggaggacatccag
aagaaggccaagaacggcaacgcgccgacgctgctgtacggcgagccggacatgaccgtc
cgggtcgtgcgcgacatcttcaacgaggacttctccaaggtcatcgtcagcggcgacgac
gcctggcagaccatccacggctacgtctcgcacgtcgccccggacctggccggccggctg
tcgaagtggacgagcgaggtcgacgtcttcgccacctaccggatcgacgagcagctcgcc
aaggcgctggaccgcaaggtctggctgcccagcggcggttcgctggtgatcgaccggacc
gaggcgatggtcgtcatcgacgtcaacaccggcaagttcaccggccagggcggcaacctg
gaggagacggtcaccaggaacaacctggaggcggccgaggagatcgtgcgccagctgcgg
ctgcgcgacctcggcggcatcatcgtgatcgacttcatcgacatggtcctggagtcgaac
cgggacctggtgctgcgccgcctgctggagtgcctgggccgcgaccgtacgaagcaccag
gtggccgaggtgacctcgctgggtctggtgcagatgacccgcaagcgggtcggccagggc
ctgctggagtccttctccgagacctgcgtccactgcaacggccgcggtgtcatcgtccac
ctggaccaggccaccgccaacggtggcggcggcaagcgcaagaagcgcggccggggcgcc
gaggcaccggagcccgtgcacgagcacgtgcacgagaccgccgccgtggccgtggagacc
ggcgaggccgtcgagcccgaggtggagaccgccgcggaggtggccgccgaggccgccgag
ccggtcgcgctgcccgcgccggagttcgcgccggacgaggagctgtacagcagcgtcgcc
gaggcggaggcggcggccacccgtggccgtacgcggcgccgggcgagccgccgggcgtcc
gctccggcgggcgcgccgaaggcgaaggcggagaaggccgagcgggcgcccaaggccgag
aaggccgagaaggccgagaaggcggagaaggccgcggaggccgaggtgcctgcggaggcc
gaggtgccgaccgcccaggaggtcaccgccgaggaggcggcggcgcgcccggtgcggccg
gagccggccgcggaggcgctggccgagccggcggccgtcgaggaccaggtggtcccggcg
ccgcaggccgaggctcccgccgccgaggaggccgcgcccaagggccgtacgcgccgtcgg
gcgacccggaaggtgtcggccccggccggttcccccgagggtgccgaggcggccgtggtg
acggtcccggaggccgcgcccgcggccgaggccccggcggagcagcccgctccggtcgcc
gaggccccggccggggagcccgcggaggccgagaagccggtggcggccgagaccgccgcg
gccccggcccggccgcgccgccgtgcggtgcgcaaggccaccgcgccgaccgcgcccgag
gaggcggccgtcgtggtcgtcccgtcggctccggcggcggaggaagccccggctgccgag
gctcccgaggcccctgccgccgaggtgacggccgaggaggtcgccgaggtcacggctccg
gccaagaaggcgacccgtaagacggccgccaagaagaccgcggcgaagaagaccaccgcc
aagaagacggcggccaagaagacggccgccaagaagacgacggccaagaaggcgacgaag
accgccaagacggccgccgcgaagtccacggcgaagaagaccaccacggtctccaccgcc
ggcgacgagggctga
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