Streptomyces reticuli: TUE45_04548
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Entry
TUE45_04548 CDS
T04246
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
srw
Streptomyces reticuli
Pathway
srw03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
srw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
TUE45_04548 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
srw03400
]
TUE45_04548 (mfd)
Enzymes [BR:
srw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
TUE45_04548 (mfd)
DNA repair and recombination proteins [BR:
srw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
TUE45_04548 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
UB2H
MFD_D3
AAA_22
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
CUW29836
LinkDB
All DBs
Position
I:5160866..5164396
Genome browser
AA seq
1176 aa
AA seq
DB search
MSLHGLLDAVVKDPALAEAISAAADGNRPHVDLVGPPAARPFAVAALAREAGRPVLAVTA
TGREAEDLAAALRSLLPEQGVVEYPSWETLPHERLSPRSDTVGRRLAVLRRLAHPSPDDP
ETGPVSVVVAPVRSVLQPQVKGLGDLEPVALRTGQSADLNDVVEALAAAAYARVELVEKR
GEFAVRGGILDVFPPTEEHPLRIEFWGDDVEEIRYFKVADQRSLEVAEHGLWAPPCRELL
LTEDVRARARALAEDHPELGELLNKIAEGIAVEGMESLAPVLVDDMELLLDVLPKGAMAV
VCDPERVRTRAADLVATSQEFLQASWAATAGGGEAPIDVGAASLWSLADVRDRARELGMM
WWSVSPFAADLELEADTLKLGMHAPETYRGDTARALADTKGWLADGWRAVFVTEGHGPAA
RTVEVLGGEGIAARLDSDLGELSPSLVHVSCGSIEYGFVDPALKLAVLTETDLSGQRTAT
RDGARMPARRRKTIDPLTLEPGDYIVHEQHGVGRYIEMVQRTVQGATREYLVVEYAPAKR
GQPGDRLYIPTDQLEQITKYVGGEAPTLHRLGGADWTKTKARAKKAVKEIAADLIKLYSA
RMAAPGHAFGADTPWQRELEDAFPYAETPDQLTTIAEVKEDMEKSVPMDRLICGDVGYGK
TEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHFGTFSERYGQFPVNVRALSRFQTDTEAKA
VLEGLKDGSVDVVIGTHRLFSSETKFKDLGLVIVDEEQRFGVEHKEQLKKLRANVDVLTM
SATPIPRTLEMAVTGIREMSTITTPPEERHPVLTFVGPYEEKQIGAAIRRELLREGQVFY
IHNRVESIDRAAARLREIVPEARIATAHGQMSESALEQVVVDFWEKKFDVLVSTTIVESG
IDISNANTLIVERGDTFGLSQLHQLRGRVGRGRERGYAYFLYPPEKPLTETAHERLATIA
QHTEMGAGMYVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYVRMVGEAVADYRRQLETGE
IEEEPPLEVKIELPVDAHVPHDYAPGERLRLQAYRSIASANSEEDIKAVREELTDRYGKL
PEPVENLLLVAGLRMLARACGVGEIVLQGTNIRFAPVELRESQELRLKRLYPGTVIKPAV
HQVLVPRPKTAKVGGKPLVGRELLAWVGEFLTSILG
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgcacggtctgctcgacgccgtcgtcaaggaccccgccctcgcggaagcgatc
agcgcggcggcggacggcaaccgcccgcacgtcgacctcgtcggccccccggccgcccgc
cccttcgcggtcgccgccctggcccgcgaggccggccgcccggtcctggccgtcacggcg
acgggccgcgaggccgaggacctggccgccgccctgcgctccctgctgcccgaacagggc
gtcgtggagtacccctcctgggagaccctcccgcacgagcggctcagcccgcgcagcgac
accgtcggccgccgcctcgccgtcctgcgccgcctggcccaccccagcccggacgacccc
gagaccggccccgtctccgtcgtcgtggcccccgtgcgctccgtgctccagccgcaggtc
aagggcctcggcgacctggagccggtggccctgagaaccggccagagcgccgatctgaac
gacgtcgtcgaagccctcgccgccgccgcgtacgcgcgcgtggagctggtcgagaagcgc
ggcgagttcgccgtgcgcggcggcatcctcgacgtgttcccgcccaccgaggaacacccc
ctgcgcatcgagttctggggcgacgacgtcgaggagatccgttacttcaaggtcgccgac
cagcgctccctcgaagtcgccgagcacggcctgtgggcgcctccgtgccgtgagctgctg
ctgaccgaggacgtccgcgcacgcgcgcgtgccctcgccgaggaccacccggagctgggc
gaactcctgaacaagatcgccgagggcatcgcggtggagggcatggagtccctcgccccg
gtcctggtggacgacatggagctgctgctcgacgtgctgcccaagggcgccatggccgtc
gtctgcgaccccgagcgggtccgcacccgcgccgccgacctcgtcgccaccagccaggag
ttcctccaggcgtcctgggcggccaccgcgggcggcggcgaggcccccatcgacgtcggc
gcagcctccctgtggtccctcgccgacgtccgcgaccgcgcgcgcgagctgggcatgatg
tggtggtccgtctcgccgttcgccgccgacctggaactggaggcggacaccctcaagctc
ggcatgcacgcccccgagacctaccgcggcgacaccgcgcgggccctcgccgacaccaag
ggctggctcgccgacggctggcgcgcggtcttcgtcaccgagggccacggcccggccgcc
cgcacggtcgaggtgctcggcggcgagggcatcgccgcccgcctcgactccgacctcggc
gagctgagcccgtcgctggtgcacgtctcctgcgggtcgatcgagtacggcttcgtcgac
ccggcactcaagctcgccgtcctcaccgagaccgacctgtccggccagcgcaccgcgacc
cgcgacggcgcccggatgccggcccgccgccgcaagaccatcgacccgctcaccctggag
ccgggcgactacatcgtccacgaacagcacggcgtcggccgctacatcgagatggtgcag
cgcaccgtgcagggcgccacccgcgagtacctggtcgtcgagtacgcgcccgccaagcgc
ggccagcccggcgaccggctgtacatcccgaccgaccagctggagcagatcaccaagtac
gtcggcggcgaggcgcccaccctgcaccgcctcggcggcgcggactggacgaagaccaag
gcccgcgcgaagaaggccgtcaaggagatcgccgccgacctgatcaagctgtacagcgcg
cgcatggccgcccccggccacgccttcggcgccgacacgccctggcagcgcgagctggag
gacgccttcccctacgccgagaccccggaccagctcaccaccatcgccgaggtcaaggag
gacatggagaagtcggtccccatggaccgcctgatctgcggcgacgtcggctacggcaag
accgagatcgccgtgcgggccgccttcaaggccgtacaggacggcaagcaggtggccgtc
ctcgtgcccacgaccctgctggtgcagcagcacttcggcacgttctccgagcggtacggg
cagttcccggtgaacgtccgggcgctgtcccggttccagaccgacaccgaggccaaggcg
gtcctggaggggctgaaggacggctcggtggacgtcgtcatcggcacccaccgcctgttc
tcctccgagaccaagttcaaggacctcggcctggtcatcgtggacgaggagcagcgcttc
ggcgtcgagcacaaggagcagctgaagaagctccgcgccaacgtcgacgtcctgaccatg
tccgcgaccccgatcccgcgcaccctggagatggcggtcaccggcatccgtgagatgtcc
acgatcaccacgcccccggaggagcgccacccggtgctcaccttcgtcgggccgtacgag
gagaagcagatcggcgccgccatccgccgcgagctgctgcgcgagggccaggtcttctac
atccacaaccgcgtcgagtccatcgaccgcgcggcggccaggctgcgcgagatcgtcccc
gaggcgcgcatcgcgacggcccacggccagatgtccgagtcggcgctggagcaggtcgtg
gtcgacttctgggagaagaagttcgacgtgctggtgtcgaccacgatcgtggagtccggc
atcgacatctccaacgccaacacgctgatcgtggagcgcggcgacaccttcggcctgtcc
cagctgcaccagctgcgcggccgggtcggccggggccgcgagcgcggctacgcgtacttc
ctgtacccgccggagaagccgctgaccgagaccgcgcacgagcgtctcgcgacgatcgcc
cagcacacggagatgggcgcgggcatgtacgtcgcgatgaaggacctggagatccgcggc
gccggcaacctgctcggcggcgagcagtccgggcacatcgccggcgtcggcttcgacctg
tacgtccgcatggtcggcgaggcggtcgccgactaccggcggcagctggagaccggcgag
atcgaggaggagccgccgctcgaggtcaagatcgagctgccggtcgacgcgcacgtcccg
cacgactacgcccccggcgagcggctgcgcctccaggcgtaccgctcgatcgcctccgcc
aactcggaggaggacatcaaggccgtccgcgaggaactcaccgaccgttacggcaagctg
cccgagccggtggagaacctgctgctggtggccgggctgcggatgctcgcgcgcgcgtgc
ggcgtcggcgagatcgtcctccagggcaccaacatccgcttcgcgccggtggagctgcgc
gagtcgcaggagctgcggctcaagcggctgtacccgggcacggtcatcaagccggccgtg
caccaggtgctggtcccgcgcccgaagaccgcgaaggtgggcggcaagccgctggtcggc
cgcgaactgctggcctgggtcggcgagttcctcacctcgatcctgggctag
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