Streptomyces reticuli: TUE45_05006
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Entry
TUE45_05006 CDS
T04246
Symbol
rtcB
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
srw
Streptomyces reticuli
Brite
KEGG Orthology (KO) [BR:
srw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
srw03016
]
TUE45_05006 (rtcB)
Enzymes [BR:
srw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
TUE45_05006 (rtcB)
Transfer RNA biogenesis [BR:
srw03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
TUE45_05006 (rtcB)
Prokaryotic type
tRNA splicing ligases
TUE45_05006 (rtcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
CUW30281
LinkDB
All DBs
Position
I:5651572..5652765
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AA seq
397 aa
AA seq
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MSYVEMPGAKVPIRMWADPATVEDVALRQLQNVATLPWIKGLAVMPDVHYGKGATVGSVI
AMQGAVCPAAVGVDIGCGMSAVKTSLTANDLPGDLSRLRSKVEQAIPVGRGMHDSPVDPA
RFHGLATAGWGDFWGRFDGVAEAVKFRQERAQKQMGTLGSGNHYLELCLDQSGSVWLTLH
SGSRNIGKELAEHHIGVAQQLPHNQGLVDRDLAVFVADTPQMAAYRNDLFWAQEYAKYNR
ALMMALLKDVIRKEFKKAKPTFEPEISCHHNYVAEERYEGMDLLVTRKGAIRAGSGEFGI
IPGSMGTSSYIVKGLGNEKAFNSASHGAGRRMSRNAAKRRFTTKDLEEQTRGVECRKDSG
VLDEIPGAYKNIDQVMDQQRDLVEVVAKLKQFICVKG
NT seq
1194 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtacgtggagatgccgggcgccaaggtcccgatccggatgtgggcggacccggcg
acggtcgaggacgtggccctgcgccagctccagaacgtggccaccctgccgtggatcaag
ggcctggccgtgatgccggacgtgcactacggcaagggtgcgacggtcggctcggtcatc
gcgatgcagggcgcggtgtgcccggcggcggtcggggtggacatcggctgcgggatgtcg
gcggtgaagacgtccctgaccgcgaacgatctccccggggacctgtcccgactgcggtcg
aaggtcgagcaggcgattccggtggggcgggggatgcatgacagtcccgtcgatccggcg
cggttccatgggctggccaccgccgggtggggcgacttctggggtcggttcgacggggtt
gcggaggcggtcaaattccgtcaggagcgggcgcagaagcagatgggaacgctcggatcc
ggaaatcactaccttgaactttgtctagatcagtcaggttcggtctggctcacgctgcac
tccgggtctcggaacatcggcaaggaactcgccgagcaccacatcggcgtggcccagcag
ctcccgcacaaccagggtctggtcgaccgtgacctcgcggtcttcgtcgcggacaccccg
cagatggcggcctaccgcaacgacctgttctgggcgcaggagtacgccaagtacaaccgc
gcgctcatgatggcgctcctcaaggacgtgatccgcaaggagttcaagaaggccaagccg
accttcgagccggagatctcctgccaccacaactacgtggcggaggagcggtacgagggc
atggacctgctcgtgacccgtaagggagcgatccgcgccggctccggtgagttcgggatc
attcccggctcgatgggcaccagctcgtacatcgtgaaggggctcggaaacgagaaggca
ttcaactcggcttcgcacggagccggtcggcggatgagccgcaacgcggccaagcgtcgc
ttcacgaccaaggacctggaggagcagacgcggggcgtggagtgccgcaaggactccggc
gtgctggacgagattccgggcgcctacaagaacatcgaccaggtgatggaccagcagcgc
gacctcgtcgaggtcgtggcgaagctgaagcagttcatctgcgtgaagggctga
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