Streptomyces reticuli: TUE45_05832
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Entry
TUE45_05832 CDS
T04246
Name
(GenBank) hypothetical protein
KO
K03628
transcription termination factor Rho
Organism
srw
Streptomyces reticuli
Pathway
srw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
srw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TUE45_05832
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
srw03021
]
TUE45_05832
03019 Messenger RNA biogenesis [BR:
srw03019
]
TUE45_05832
Transcription machinery [BR:
srw03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
TUE45_05832
Messenger RNA biogenesis [BR:
srw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
TUE45_05832
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_25
AAA
ResIII
AAA_22
Motif
Other DBs
NCBI-ProteinID:
CUW31094
LinkDB
All DBs
Position
I:6538957..6540933
Genome browser
AA seq
658 aa
AA seq
DB search
MSDTTDLMGARVEETAAAPATDASAPATGAGSRRRRGTGLEGMVLAELQQVASGLGIRGT
ARMRKSQLIEVIKEAQAAGGAPAAAKADTATETKPKRRATSKARTGEDAEKKAEKAGKAA
DSPAEKAVAQQQIEIPGQPASDDAPTERRRRRATADAGSPAASSAETVAAEAKSEAKAET
PAQQQPQQGEAKGDAGDGEGRGRRDRRERGRDRDRRNKGDEQQGGQQRQQQGQQQGGRQD
RQQDDDDFEGGRRGRRGRYRDRRGRRGRDEIAEPQLAEDDVLIPVAGILDILDNYAFIRT
SGYLPGPNDVYVSLAQVRKNGLRKGDHVTGAVRQPKEGERREKFNALVRLDSVNGMAPEH
GRGRPEFNKLTPLYPQDRLRLETDPGVLTTRIIDLVSPIGKGQRGLIVAPPKTGKTMIMQ
AIANAITHNNPECHLMVVLVDERPEEVTDMQRSVKGEVISSTFDRPAEDHTTVAELAIER
AKRLVELGHDVVVLLDSITRLGRAYNLAAPASGRILSGGVDSTALYPPKRFFGAARNIED
GGSLTILATALVDTGSRMDEVIFEEFKGTGNMELKLDRKLADKRIFPAVDVDASGTRKEE
ILLGAEELGIVWKLRRVLHALDQQQAIELLLDKMKQTKSNVEFLMQIQKTTPAPGNGD
NT seq
1977 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgacaccaccgatctgatgggcgcacgtgtcgaggagaccgctgccgcgcccgcc
acggacgcctccgcgcctgccaccggtgccggctcccggcggcgccgcggtaccggcctc
gagggcatggtgctggccgagctgcagcaggtcgcctcgggcctcgggatcaggggcacc
gcgcggatgcgcaagagccagctgatcgaggtcatcaaggaggcccaggccgccggggga
gcccccgccgccgccaaggccgacaccgccaccgagaccaagccgaagcgccgggccacc
tccaaggcccgtaccggcgaggacgccgagaagaaggcggagaaggcggggaaggctgct
gactctcccgccgagaaggccgtggcccagcagcagatcgagatccccggccagcccgcc
tcggacgacgccccgaccgagcgccggcgccgccgcgccaccgccgacgcgggcagcccg
gccgcgagcagcgccgagaccgtcgccgccgaggccaagagcgaggccaaggccgagacg
cccgcgcagcagcagccgcagcagggcgaggccaagggcgacgccggtgacggcgagggc
cgtggccgccgggaccgccgcgagcgcggccgggaccgtgaccgccgtaacaagggcgac
gagcagcagggcggccagcagcgtcagcagcagggccagcagcagggcggccggcaggac
cgccagcaggacgacgacgacttcgagggcggccggcgcggccgtcgtggccgctaccgc
gaccgccggggccgtcgcggccgtgacgagatcgccgagccgcagctcgccgaggacgac
gtcctgatccccgtcgcgggcatcctggacatcctcgacaactacgccttcatccggacc
tccggctacctgccgggcccgaacgacgtgtacgtctccctcgcccaggtccgcaagaac
ggcctgcgcaagggtgaccacgtcaccggtgcggtccggcagccgaaggagggcgagcgc
cgcgagaagttcaacgcgctggtccgcctggactccgtcaacggcatggcgcccgaacac
ggccgcggccgcccggagttcaacaagctgaccccgctctacccgcaggaccggctccgt
ctggagaccgacccgggcgtgctcaccacccgcatcatcgacctggtctcgccgatcggt
aagggccagcgcggtctgatcgtggccccgccgaagaccggcaagaccatgatcatgcag
gcgatcgccaacgcgatcacgcacaacaaccccgagtgccacctgatggtcgtcctcgtc
gacgagcgtccggaagaggtcaccgacatgcagcggtcggtcaagggcgaggtcatctcc
tcgaccttcgaccgtccggccgaggaccacacgaccgtcgccgagctggccatcgagcgg
gccaagcgactggtcgagctgggccacgacgtggtcgtgctgctcgactcgatcacgcgt
ctgggccgcgcctacaacctggcggcgccggcctccggccgcatcctgtccggtggtgtc
gactcgaccgcgctctacccgccgaagcggttcttcggtgcggcgcggaacatcgaggac
ggcggctcgctgaccatcctggccacggcgctcgtggacaccgggtcccgcatggacgag
gtgatcttcgaggagttcaagggcaccggcaacatggagctgaagctcgaccggaagctc
gccgacaagcgcatcttcccggcggtggacgtggacgcgtccggtacccgtaaggaagag
atcctgctcggcgccgaggagctgggcatcgtctggaagctgcgccgggtgctgcacgcg
ctcgaccagcagcaggcgatcgagctgcttctcgacaagatgaagcagaccaagtcgaac
gtcgagttcctgatgcagatccagaagacgacgccggcgcccggcaacggcgactga
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