Streptomyces reticuli: TUE45_06238
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Entry
TUE45_06238 CDS
T04246
Name
(GenBank) Putative ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
srw
Streptomyces reticuli
Pathway
srw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
srw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TUE45_06238
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
srw03019
]
TUE45_06238
Messenger RNA biogenesis [BR:
srw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
TUE45_06238
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
CUW31494
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All DBs
Position
I:7013595..7015280
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AA seq
561 aa
AA seq
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MSHPHPELGPPPPLPEGGLRVTPLGGLGEIGRNMTVFEYGGRLLIVDCGVLFPEEEQPGI
DLILPDFSSIRNRLDDIEGIVLTHGHEDHIGGVPFLLREKPDIPLIGSKLTLALIEAKLQ
EHRIRPYTLEVAEGNRERIGPFDCEFIAVNHSIPDALAVAIRTPAGMAVHTGDFKMDQLP
LDNRLTDLHAFARLSEEGIDLLLSDSTNAEVPGFTPHERDISNVLRQVFAGARKRIIVAS
FASHVHRIQQILDAAHEYGRRVAFVGRSMVRNMGIARDLGYLKVPAGLVVDVKTLDDLPD
HEVVLVCTGSQGEPMAALSRMANRDHQIRIVQGDTVILASSLIPGNENAVYRVINGLTRW
GANVVHKGNAKVHVSGHASAGELLYFYNICRPRNLMPVHGEWRHLRANAELGALTGVPHD
RIVIAEDGVAVDLVDGKAKISGKVQAGYVYVDGLSVGDVGEPALKDRKILGDEGIISVFV
VMDASTGKITGGPHVQARGSGIEDSAFTDVIPKITEVLERSAQDGVVEPHQLQQLIRRTL
GKWVSETYRRRPMILPVVVEV
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
ttgagtcatccgcatcctgaactcggcccgccgccgccgctccccgagggcggcctgcgg
gtcaccccgctcggcggcctcggcgagatcggccggaacatgacggtcttcgagtacggc
ggccgcctgctgatcgtcgactgcggagtgctcttcccggaggaggagcagcccggaatc
gacctgatcctgccggacttctcgtccatccgtaaccgcctggacgacatcgagggcatc
gtcctcacgcacggacacgaggaccacatcggcggcgtcccgttcctgctccgcgagaag
ccggacatcccgctgatcggctccaagctcaccctcgccctgatcgaggccaagctccag
gagcaccggatccgtccgtacacgctggaggtggcggaggggaaccgggagcgcatcggc
cccttcgactgcgagttcatcgccgtcaaccactccatcccggacgccctggccgtcgcc
atccgtacgcccgccggcatggcggtgcacaccggcgacttcaagatggaccagctcccg
ctggacaaccgcctcaccgacctgcacgccttcgcgcggctgagcgaggagggcatcgac
ctccttctcagcgactccacgaacgccgaggtcccggggttcaccccgcacgagcgcgac
atctccaacgtcctgcggcaggtcttcgccggcgcccgcaagcggatcatcgtggcgagc
ttcgccagccacgtccaccgcatccagcagattctggacgcggcccacgagtacggccgc
cgggtcgccttcgtcggccggtccatggtccgcaacatgggcatcgcccgcgacctgggc
tatctgaaggtcccggcgggcctggtggtcgacgtcaagacgctggacgacctgcccgac
cacgaggtggtcctggtctgcacgggctctcagggcgagccgatggcagccctgtcccgc
atggccaaccgcgaccaccagatccgcatcgtccagggcgacaccgtcatcctcgcgtcc
tcgctgatcccggggaacgagaacgcggtctaccgcgtgatcaacggcctgacccgctgg
ggcgccaacgtcgtccacaagggcaacgccaaggtgcatgtctccggtcacgcgtccgcg
ggcgagctgctgtacttctacaacatctgccgcccgcggaacctgatgccggtccacggc
gaatggcgccacctgcgggccaacgccgagctgggcgccctgacgggcgtcccgcacgac
cggatcgtcatcgccgaggacggcgtggcggtcgacctggtcgacggcaaggccaagatc
tccggcaaggtccaggccggttacgtctacgtcgacggcctctcggtcggcgacgtcggc
gagccggcgctgaaggaccgcaagatcctcggcgacgagggcatcatctcggtcttcgtg
gtcatggacgcctccaccgggaagatcaccggcggcccgcacgtccaggcgcgcggctcc
ggcatcgaggactcggccttcaccgacgtgatcccgaagatcacggaggtcctggagcgg
tccgcccaggacggcgtcgtggagccccaccagctccagcagctcatccgccggaccctc
ggcaagtgggtctcggagacctatcgccgcaggccgatgatcctcccggtggtcgtggag
gtctga
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