Sinocyclocheilus rhinocerous: 107705213
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Entry
107705213 CDS
T04916
Name
(RefSeq) PAB-dependent poly(A)-specific ribonuclease subunit PAN3-like
KO
K12572
PAB-dependent poly(A)-specific ribonuclease subunit 3
Organism
srx
Sinocyclocheilus rhinocerous
Pathway
srx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
srx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107705213
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
srx03019
]
107705213
Messenger RNA biogenesis [BR:
srx03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
107705213
mRNA degradation factors
3'-5' decay
Pan complex
107705213
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Pan3_PK
zf-CCCH
zf-CCCH_4
zf_CCCH_4
Torus
zf-CCCH_2
Motif
Other DBs
NCBI-GeneID:
107705213
NCBI-ProteinID:
XP_016363892
UniProt:
A0A673HWX6
LinkDB
All DBs
Position
Unknown
AA seq
799 aa
AA seq
DB search
MNSGLPASAAPLGGVGIPGVKVKFCRYYAKDKTCFYGDECQFLHEDPSMASLSLHGGGTG
AGGGGSPVSLSLAGGAVTAGYVLGNSAASGAPANVPKKNDSLGPAGTAPEGHLLSIPGME
GGALNDASLTNSYFSSTFIGVNGFGGPAESKYSMMQRMTSSSSSPSLLNDGAKSFSHGTH
DPVNSPTSSLFSDFGALSISQRRKAPNPTASEFVPKGAPRMASMSQTTVPAFTSPIFPHP
GLSSSTAAALAPGMSLSAGSSPLHSPKITPHTSPAPRRRSHTPNPNPANYMVPTTASDQG
GGAHVIQKETVGGTTYFYTDNTPAPLAGMVFPTYHMYPQTAPHVAYMQPKANAPSFFMAD
ELRQELINRHLITMAQIDQSENPGVPSEVDSYHSLFPLEPLPPPNRIQKTSNFSYITSCY
KAVNSKDDLPYCLRRIHGFRLVNTKCMMLVDMWKKIQHSNTMTLREVFTTKAFGDHSLVF
SYDFHAGAETMFSRHFNDPAADSYFTKRKWGQHELPPPRQHVGLLPESLIWAYIVQLSSA
LRTIHTAGLACRVMDPSKILITGKTRLRVNCVGMFDVLTFDNSQTNHLALMPQYQQADLI
SLGKVVLALACNSLAGIKRENLQKAMELVSINYSSDLKNLILYLLSEQSRLRSVNDIMPM
IGARFYTQLDASQMRNDVIEEDLAKEVQNGRLFRLLAKLGTINERPEFQKDPTWSETGDR
YLLKLFRDHLFHQVTEAGTPWIDLSHIVSCLNKLDAGVPEKISLVSRDEKSVLVVTYSDL
KRCFESTFQELLAATNGPL
NT seq
2400 nt
NT seq
+upstream
nt +downstream
nt
atgaacagtggactcccagcttcagctgctccgctcgggggtgtcggaatacccggtgtg
aaggtgaaattctgccgttattatgcgaaagacaagacttgtttttacggagatgaatgc
cagtttttgcacgaggacccgtccatggcgagtctttctctgcacggtggtggtacaggt
gctggcggaggaggaagccccgtctctttatctctcgccggaggagcagtgacggcggga
tacgtgctcggaaatagcgcggccagcggcgctccggcaaacgttcccaaaaagaacgat
tctctcggtcccgcaggaacagccccggagggacatctgttgtccatccctgggatggag
ggaggtgctctgaatgatgccagtctgaccaactcgtacttcagcagcacctttattggg
gtaaatgggtttggtggcccagcagagtccaaatattcaatgatgcagaggatgaccagc
agtagcagttctccaagtctgctgaatgatggtgccaagagcttcagccacggcacacat
gatccagtaaattccccaacatcatctctcttcagtgattttggtgctttgagcatatca
caaaggagaaaggctcctaaccccacagccagtgagtttgtccctaaaggggccccacgg
atggcctccatgtctcagacgaccgtgccagcattcacctcccccatcttccctcatcct
ggcttgagcagctccacggcggctgctcttgcacctggtatgtcgctctctgctgggtct
tctcctcttcactcccccaaaatcacccctcacacgtccccagccccgcggcggcgcagt
cacacgcccaaccccaacccagccaattacatggtgcccaccactgcgtctgaccaggga
ggcggagcccacgtgattcaaaaggagaccgtgggcgggactacctacttctataccgac
aacacccctgctcccttggccggaatggtgttcccaacatatcacatgtatccgcaaacg
gcacctcatgtggcatacatgcagccaaaagccaatgcaccatccttctttatggctgac
gaactccgacaggagctgattaacaggcatttgataacgatggcacagatagatcagtct
gagaaccctggagtgccgtctgaggtagacagttaccacagcctctttcccctggagccc
cttcccccaccaaaccgtattcagaaaaccagcaacttcagttacatcacttcctgttac
aaggctgtcaacagcaaagatgacctgccttactgcctcaggaggatacatggcttcagg
ctggtcaacaccaagtgtatgatgctggtagacatgtggaagaagattcagcactccaat
actatgaccctccgagaggtcttcaccaccaaagcatttggagaccactcactggtattt
tcctatgacttccatgcgggggcagagaccatgttcagcaggcacttcaacgatccggct
gcggattcttacttcacaaagagaaagtgggggcagcatgagctccctcctccacggcaa
catgtgggcttgttaccggagtcgctgatttgggcctacattgtccagctgagctcggca
ctgcgcaccattcacacggctgggctggcctgcagggtcatggaccctagtaagatcctc
atcactggaaagacacggttacgagtcaactgtgtaggaatgtttgatgtcttaacattt
gacaatagtcagaccaaccacctggcgctgatgccccagtaccagcaagcagatctcatc
tccctggggaaggtggtattggctctggcgtgtaactctctagctggcattaagagagag
aatttgcagaaggccatggagctggtgtcaatcaactactcttctgacctcaagaacctc
attctgtacctgctctcggaacaaagccgtctgcgcagcgtcaatgacattatgcccatg
attggagcacgattttacactcaacttgatgcctcgcaaatgagaaatgatgtcattgag
gaggacctggccaaggaggttcaaaatgggcgattgttccgcctactggcaaaactggga
acgatcaacgagagaccagagttccagaaggacccgacgtggtctgagactggtgatcgt
tacctgctgaagctcttcagagatcacctgttccaccaggtaactgaggcaggcacaccc
tggatcgacctcagccacatcgtgtcctgtctcaataagttggatgctggagtaccggag
aagatcagtctggtgtcacgggatgagaagagcgtgctcgtggtgacttactcagacctg
aagcgctgctttgagagcaccttccaggaactgcttgccgccacgaatggacccctgtaa
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