KEGG   Sinocyclocheilus rhinocerous: 107706130
Entry
107706130         CDS       T04916                                 
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein-like
  KO
K12857  Prp8 binding protein
Organism
srx  Sinocyclocheilus rhinocerous
Pathway
srx03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:srx00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    107706130
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:srx03041]
    107706130
Spliceosome [BR:srx03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    107706130
 Complex C
   U5 SnRNP specific factors
    107706130
SSDB
Motif
Pfam: WD40 WD40_Prp19 Beta-prop_TEP1_2nd WD40_CDC20-Fz EIF3I WDR55 WD40_WDHD1_1st Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_C Beta-prop_WDR75_1st Beta-prop_SCAP WDR90_beta-prop_4th Beta-prop_EML NBCH_WD40 Beta-prop_SPT8 Beta-prop_IFT122_1st Beta-prop_EIPR1 WD40_MABP1-WDR62_1st ANAPC4_WD40 Beta-prop_RIG_2nd Beta-prop_DCAF4 Beta-prop_IFT140_1st Beta-prop_Vps41 Beta-prop_WDR19_1st WD40_RFWD3 Beta-prop_WDR35_TULP_N Cytochrom_D1 Beta-prop_Nup120_160 Beta-prop_NWD2_C WD40_like
Other DBs
NCBI-GeneID: 107706130
NCBI-ProteinID: XP_016365199
UniProt: A0A673IB87
LinkDB
Position
Unknown
AA seq 268 aa
MIEPKKRGAEMAVVPVGVKRPRTELVAAAQAQQLSAMGPPRSSSLQAPIMLLSGHEGEVY
CCKFHPNGATLASSGYDRLILLWNVYGDCENYATLKGHSGAVMELHYNTDGSLLFSASTD
KTVCVWDSETGERVKRLKGHTSFVNSCFPARRGPQLACTGSDDGTVKLWDIRKKASVHTF
QNTYQVLSVTFNDTSDQIISGGIDNDIKVWDLRQNKLIYSMQGHGDSVTGLSLSADGSYL
LSNSMDNSGKPKCVFVHLCTHYRSKVWG
NT seq 807 nt   +upstreamnt  +downstreamnt
atgatcgaaccgaagaagcgtggcgcagagatggcagtcgttcccgtcggagtgaagagg
ccccggacagagctggtggctgcagcgcaggcccagcagctctctgctatgggccccccg
cgcagctccagtctgcaggctcctataatgctgctctctggtcatgaaggtgaagtttac
tgctgcaaatttcaccccaatggagccacgttagcctcctctggatatgaccgtctcatc
ttgctgtggaatgtatatggcgactgtgagaactatgcaacacttaaaggccacagtgga
gctgtgatggagcttcattataacacggatggcagtctgctcttttcagccagtacggac
aagacggtgtgtgtgtgggacagtgagacaggggaacgtgtgaagcgtctgaaaggtcac
acgtccttcgtgaactcatgttttccggctcggcgcggaccacagctggcctgtacgggc
agcgatgatggaactgtgaagctgtgggacattaggaagaaggcctctgttcacacattc
cagaacacgtatcaggttcttagtgtgacattcaatgacaccagtgaccagatcatctca
ggaggcatcgacaacgacataaaggtatgggacctcagacagaacaagctgatttacagt
atgcagggtcatggagactctgtgacaggtctgagtctcagtgcagatgggtcctacctg
ctgtctaactcaatggataacagcggtaagcctaaatgtgtgttcgtgcatttgtgtaca
cactacagatcaaaagtttggggttag

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