Sinocyclocheilus rhinocerous: 107706662
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Entry
107706662 CDS
T04916
Name
(RefSeq) TFIIH basal transcription factor complex helicase XPB subunit isoform X1
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
srx
Sinocyclocheilus rhinocerous
Pathway
srx03022
Basal transcription factors
srx03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
srx00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
107706662
09124 Replication and repair
03420 Nucleotide excision repair
107706662
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
srx03021
]
107706662
03400 DNA repair and recombination proteins [BR:
srx03400
]
107706662
Enzymes [BR:
srx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
107706662
Transcription machinery [BR:
srx03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
107706662
DNA repair and recombination proteins [BR:
srx03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
107706662
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
DEAD
SNF2-rel_dom
AAA_34
AAA_22
Motif
Other DBs
NCBI-GeneID:
107706662
NCBI-ProteinID:
XP_016365933
LinkDB
All DBs
Position
Unknown
AA seq
782 aa
AA seq
DB search
MGKKDKSDRDKKSKKRYYDEEEDDEEVMGSESQEAVPAAAGKQVDESSTKLDEYGAKDYR
LQMLLKNDHTSRPLWVAPDGHIFLEAFSPVYKYAQDFLVAISEPVCRPTHVHEYKLTAYS
LYAAVSVGLQTSDIIEYLQKLSKTSVPDGIVQFIKLCTVSYGKVKLVLKHNRYFVESAFP
DVIQRLLQDTVIRDCRLRSAESEETELITETISSKSAISKSQQDNGGPSTSQPADGQRTG
NQVPEDIFSYYEQMDKEEEEEEETQTVSFEIRQEMIEELQKRCIQLEYPLLAEYDFRNDT
VNPDINMDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTAACTVRKRC
LVLGNSSVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIGCSVAISTYSMLGHTTKRSW
EAERVMEWMKSQEWGLIILDEVHTIPAKMFRRVLTIVQAHCKLGLTATLVREDDKIVDLN
FLIGPKLYEANWMELQNSGYIAKVQCAEVWCPMSPEFYREYVAIKTKKRILLYTMNPNKF
RACQFLIRFHERRNDKIIVFADNVFALKEYAIRLNKPYIYGPTSQGERMQILQNFKHNPK
INTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYNAYFYS
LVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEEEDLMFSSREEQQQLLHKVLAASD
LDAEEEVVMGDVGGKPQFSRRMGTMSSMSGADDAVYMEYQTSRSGKSLAGKNVHPLFKRF
RK
NT seq
2349 nt
NT seq
+upstream
nt +downstream
nt
atggggaagaaagataagagtgatcgagataaaaagtccaagaaacgttattatgatgag
gaagaggatgatgaagaggtgatgggcagtgagtctcaggaggctgttccagcagctgct
gggaagcaggtggatgaatccagcactaaactggatgagtatggagccaaagactacaga
ctacagatgcttctcaagaatgaccacacttcccggcccctatgggtggctcctgatggt
cacatcttcctagaggctttctctcccgtgtataaatacgctcaggacttcctggtggcc
atatcagagccggtgtgcagacctacccatgtgcacgagtacaagctgacggcttattct
ctatacgccgctgtgagcgtcggcctgcagacctctgacatcatagagtacctgcagaaa
ctcagcaagacctctgtgccagacggcatagtgcagtttattaagttgtgcacagtgagc
tacggtaaagtcaaactggtcctgaaacacaacaggtactttgtggagagtgcgttccct
gatgtcattcagaggctcttacaggacacagtgattcgggactgtcgtcttcggtctgct
gagagtgaggagactgagctcatcactgagaccatctctagcaaatctgcaatctcaaag
tctcagcaggacaatggtggtccatccacctcccagcctgcagacgggcagcgcacagga
aatcaggtgccagaggacatcttcagttactacgagcagatggacaaagaggaggaggag
gaggaagagacacaaacagtgtcttttgagatccgtcaggaaatgatagaggagcttcag
aaacgttgcattcagttggaatatcctctcctggctgaatatgatttccgtaacgacacg
gtgaacccagacatcaacatggacctgaagcccactgctgtgctgagaccatatcaggaa
aagagtttaaggaagatgtttgggaacggcagagctcgatctggagtcatcgtcctgcct
tgtggtgctggaaagtcactggtgggtgtcactgctgcctgcacagtgcgtaagcgctgt
ctggtgttgggaaactcctctgtgtcagtggaacagtggaaggctcagtttaagatgtgg
tccaccattgatgactcccagatctgccgtttcacttcagatgcaaaagacaaacccatc
ggctgctcggtggccattagtacttattctatgctgggccacaccaccaaacgctcatgg
gaggctgagagggtcatggagtggatgaaaagtcaggagtgggggctcattatactagac
gaggtgcacacaatcccagcaaagatgttccgtcgtgttctgacgatagtccaggctcac
tgtaaactgggtctcactgccacactagtaagagaggatgataagattgtggatctgaac
ttcctgattgggccgaagctctatgaggcaaactggatggaactacagaacagtggttac
attgctaaagtccagtgtgctgaggtatggtgtcccatgtctcctgagttttatcgtgaa
tatgtggccataaagacgaagaaaagaattctgctctacaccatgaatcccaacaagttc
cgtgcatgtcagttcctgatccgcttccacgagcggagaaacgacaagatcatcgtcttt
gccgacaacgtcttcgctctgaaagaatatgccatccgcctgaacaaaccgtatatttat
ggacccacatctcaaggagaacgtatgcagatccttcagaactttaaacacaatcccaaa
atcaataccatcttcatctccaaggttggagatacttcatttgacctgccagaggcaaac
gtgctaatccagatctcgtctcacggcggttctcgccgtcaggaagctcagagactgggc
agagtgctgcgagccaagaaaggtatggtcgcggaagaatacaatgcttacttttactca
ctcgtctcgcaggacacacaggaaatggcttattccaccaagagacagcgcttcctagtg
gaccagggatacagtttcaaggtgatcacaaaattggctgggatggaggaggaagacttg
atgttttcctctcgtgaggaacagcagcagctcttgcacaaagttctggcagcatcagat
cttgatgcagaagaggaagtggtgatgggagacgtgggagggaagccacagttttctcgc
cgtatgggaactatgagctccatgtctggtgcagacgatgccgtctacatggaataccag
acgtcccgcagtggcaagtctttagctggcaagaatgtccatcctctgtttaaacgcttc
cgcaagtga
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integrated database retrieval system
