Sinocyclocheilus rhinocerous: 107706906
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Entry
107706906 CDS
T04916
Name
(RefSeq) ATP-dependent RNA helicase DHX8 isoform X1
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
srx
Sinocyclocheilus rhinocerous
Pathway
srx03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
srx00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107706906
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
srx03041
]
107706906
Enzymes [BR:
srx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
107706906
Spliceosome [BR:
srx03041
]
Complex C
Other components
Step II factors
107706906
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
Helicase_C
WHD_HA2
DEAD
AAA_22
GIPC1_GH2
PRP38_assoc
AAA_19
nSTAND3
AAA_16
T2SSE
Sigma54_activ_2
PhoH
TsaE
Flavi_DEAD
nSTAND_NTPase5
ABC_tran
Motif
Other DBs
NCBI-GeneID:
107706906
NCBI-ProteinID:
XP_016366241
UniProt:
A0A673LHF6
LinkDB
All DBs
Position
Unknown
AA seq
1200 aa
AA seq
DB search
MAEIGEDELKKLEYLSLVSKVCTELDNHLGINDKDLAEFVISLAEKNPSIDEFKTVLVKN
GADFTDSLVSNLLRLIQTMRPPANASTSKASHAVAKPKSEKDTLKELFPALCRPDNPNTR
TMLDENDVKVAADAMKELEMFMPSVSGTEPSSNKHRSETSSGSKKKRRSRSRSRSRDRDR
DRRRRHRSRTRSRSRSNERDRRKRRSRWHSRSRSRSPARGDRDKGSDRWKDKHVDRPPPE
EPSVGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSKGQRVK
VKVLSFTGSKTSLSMKDVDQDTGEDLNPNRRRNVGGEGQEESAMRNPDRPTNLNLGHAPE
VEDDTLERKRLTKISDPEKWEIKQMIAANVLSKEEFPDFDEETGILPKVDDEEDEDLEIE
LVEEEPPFLRGHTKQSMDMSPVKIVKNPDGSLSQAAMMQSALAKERREVKQAQREAEMDS
IPTGLNKHWVDPLPDTDGRQIAANMRGIGMMPNDIPEWKKHAFGGNKASYGKKTQLSILE
QRESLPIYKLKEQLIQAVHDNQILIVIGETGSGKTTQITQYLAEAGYTTRGKIGCTQPRR
VAAMSVAKRVSEEYGCCLGQEVGYTIRFEDCTSPETVIKYMTDGMLLRECLIDPDLGQYA
IIMLDEAHERTIHTDVLFGLLKKTVQKRTDMKLIVTSATLDAVKFSQYFYEAPIFTIPGR
TYPVEVLYTKEPETDYLDASLITVMQIHLTEPPGDVLVFLTGQEEIDTACEILYERMKSL
GPDVPELIILPVYSALPSEMQTRIFDPAPPGSRKVVIATNIAETSLTIDGIYYVVDPGFV
KQKVYNSKTGIDQLVVTPISQAQAKQRAGRAGRTGPGKCYRLYTERAYRDEMLTTNVPEI
QRTNLASTVLSLKAMGINDLLSFDFMDAPPMETLITAMEQLYTLGALDDEGLLTRLGRRM
AEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQNVFYRPKDKQALADQKKAKFHQPEG
DHLTLLAVYNSWKNNKFSNPWCYENFIQARSLRRAQDIRKQMLGIMDRHKLDVVSCGKAT
VRVQKAICSGFFRNAAKKDPQEGYRTLIDQQVVYIHPSSALFNRQPEWVVYHELVLTTKE
YMREVTTIDPRWLVEFSPAFFKVSDPTRLSKQKKQQRLEPLYNRYEEPNAWRISRAFRRR
NT seq
3603 nt
NT seq
+upstream
nt +downstream
nt
atggcagagatcggggaagacgagctcaaaaagcttgaatatttgtctttggtgtctaaa
gtttgtaccgaacttgacaaccatttaggaatcaacgataaggaccttgctgagtttgtt
atcagtcttgctgagaaaaacccaagcattgatgaatttaagacagtgctggttaaaaat
ggagccgatttcacagattcactcgtcagcaatttgcttcgtctcattcaaaccatgcgt
cctcctgcaaacgcatctaccagtaaagcctctcatgctgtggctaagccaaagagtgaa
aaggacacgctgaaagagctgtttccagctctgtgcagacctgacaatcctaatactagg
actatgctggatgagaatgatgtgaaagttgctgctgatgccatgaaagagttggagatg
tttatgcccagtgttagtggtacagaacctagcagcaataaacacaggtctgaaaccagc
agcggcagtaagaagaagcggaggagcagaagtcgcagtcggagcagagacagggataga
gaccgacggagacgccatcgctctcgcacccgttccagatctcgctctaatgagagagac
agaaggaagcgcaggagccgctggcactctcgcagcaggtcgaggagtcctgcacgggga
gacagagacaaaggctcagaccgctggaaggacaaacatgtggaccgcccccctccagag
gagccatctgtgggcgatatctacaacggcaaagtcaccagtattatgcagtttggctgc
tttgtgcagttggaaggtctcaggaaacgctgggaaggcttggtccatatttctgagctc
aggagagaaggtcgggtagcaaatgtggcagatgtggtcagcaaaggtcaaagggtcaaa
gtcaaggtgttgtccttcactggatccaaaacaagtctcagtatgaaggacgttgaccag
gatactggtgaagatctgaaccctaacaggaggagaaatgtgggtggggaaggtcaggaa
gagtcggccatgaggaatcctgacagacctacaaacctgaacctgggccatgctccagag
gtagaggatgacacactggaacgcaaaagactcaccaagatctccgatccagagaagtgg
gaaatcaaacagatgattgctgccaatgtgttgtctaaggaggaattcccagactttgat
gaagagacaggaattctgcctaaagtagatgatgaggaagatgaggacttggagattgag
ctggtggaagaggaacctccattcctgaggggacacaccaaacagagcatggacatgagt
cctgtcaagattgtcaagaaccccgatggatctctctcccaagcagccatgatgcagagt
gccctggccaaagagcgacgggaggtgaaacaggcccaacgggaggctgaaatggactca
atccccacgggcctaaacaaacactgggtggacccactgcctgacactgacggcaggcag
atagctgccaacatgaggggcataggtatgatgcccaatgacatcccagaatggaagaaa
cacgcctttggtggcaacaaggcctcctatggaaaaaagactcaactttctatcctagag
caaagagagagtcttcccatctacaagctgaaagagcagctcattcaggctgtccatgac
aaccagatcctgattgtgattggtgagacaggctcaggaaagaccactcagatcactcag
tacctggctgaggctggatacaccacacgggggaagatcgggtgcacgcaacccagaaga
gtggcagccatgtctgtggctaaaagagtgtcagaggaatacggttgctgtttaggtcaa
gaggttggctacaccatccgttttgaggactgcacaagtcccgagactgtcattaagtac
atgacggacggtatgctgttaagagagtgtctgattgaccctgatctgggccagtatgcc
atcattatgttggatgaggcccatgagagaaccattcacacagatgtgctctttggcctg
ctcaagaagactgtacagaagcgaactgacatgaagctcattgtgacatctgctacgctg
gatgctgtgaaattctcacagtacttttatgaagcacctatttttactatccctggtcgt
acatatccagtggaggttttgtacactaaagaacctgagactgattatctggatgccagt
ctgatcacagtcatgcagattcacctcactgagcctccaggtgacgtcttggtgttcctg
acgggtcaggaggagatcgacactgcctgtgagatcctgtacgaacgaatgaaatccctt
ggtcctgatgtcccagagctgatcatcctcccagtctactctgccctgcccagtgaaatg
caaaccaggatctttgacccagcaccacctggaagtagaaaggtggtcattgctactaac
attgcagagacttctttgacaattgatgggatctactatgtggtggatccaggttttgtc
aagcagaaggtttataactccaaaactggcattgatcagctagtagttacccccatttcc
caggcccaggctaagcagcgagcaggcagagcaggtagaacaggccctgggaagtgctac
agactctacacagaacgtgcctacagagatgagatgctcaccaccaacgtacctgagatt
cagagaactaacttggccagcactgtactgtctctaaaggcaatgggcatcaatgacctg
ttgtcatttgatttcatggatgctccgcccatggagacgctcatcacagccatggagcag
ctgtacactctgggagcattggatgatgaaggcttgcttacacgcctcggtcgtagaatg
gccgagtttcctctggagcccatgctttgtaagatgttgatcatgtccgtccatcttggc
tgcagcgaagagatgctgaccattgtgtcaatgctttcagtacagaatgtcttctacaga
ccaaaggacaaacaagctctggcagaccagaagaaggccaagtttcaccagcctgagggg
gaccatctgactttgttggctgtctacaactcctggaagaacaacaagttttccaacccc
tggtgctacgaaaacttcatccaggcgcgatctctcaggcgtgcgcaggatatccgcaaa
cagatgctgggcatcatggacagacacaagttggatgtggtatcatgcggtaaagccaca
gtacgtgtacagaaggccatctgcagtggtttcttccgaaatgcagccaaaaaggaccct
caagaaggttacaggaccctcatagaccagcaggtggtctacatccacccctccagcgca
ttgttcaatcgccaaccagaatgggtggtgtatcatgagcttgtgctgaccaccaaggag
tacatgagggaggtgaccaccattgacccgaggtggcttgtagaattttctccagctttc
ttcaaagtctctgatcccacacgcctcagcaaacagaagaaacagcagcggttggagccc
ctttacaaccgctacgaggaaccaaatgcttggagaatatccagagccttcagacgacgc
tag
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integrated database retrieval system
