Sinocyclocheilus rhinocerous: 107707948
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Entry
107707948 CDS
T04916
Name
(RefSeq) tRNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
srx
Sinocyclocheilus rhinocerous
Brite
KEGG Orthology (KO) [BR:
srx00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
srx03016
]
107707948
Enzymes [BR:
srx01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
107707948
Transfer RNA biogenesis [BR:
srx03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
107707948
Prokaryotic type
tRNA splicing ligases
107707948
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-GeneID:
107707948
NCBI-ProteinID:
XP_016367556
LinkDB
All DBs
Position
Unknown
AA seq
430 aa
AA seq
DB search
MNRTYNDELQYLDKIHKNCWRIKKGFVPNMQVEGVFYVNDPLEKLMFEELRNACRGGGFG
GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMDDPEAVVSPGGVGFDI
NCGVRLLRTNLDEGDVQPVKEQLAQSMFDHIPVGVEFGSKGVIPMGAKDLEEALEMGVDW
SLREGYAWAEDKEHCEEYGRMLQADPNKVSSKAKKRGLPQLGTLGAGNHYAEIQVVDEIY
NDYAAKKMGIDHKGQICVMIHSGSRGLGHQVATDALVAMEKAMKRDKITVNDRQLACARI
TSPEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFSKVFNTTPDDLDMHIIYDVSHNIAKV
EEHMLEGKQKTLLVHRKGSTRAFPPHHPLIPVDYQAPESYKNVTDVVNTCHDAGISKKAI
KLRPIAVIKG
NT seq
1293 nt
NT seq
+upstream
nt +downstream
nt
atgaatcgcacttataacgatgagcttcagtatctggataaaatccacaaaaactgctgg
cggatcaagaagggcttcgtgccgaacatgcaggtggagggtgttttctatgtgaatgat
cctctggagaaactcatgtttgaggagctgagaaacgcctgtcgtggtggagggtttggt
ggtttcttgcctgctatgaagcaaattggaaacgtcgctgccctgccaggaatcgtacat
cggtccatcggtttacctgacgttcactccggatatggttttgctatcggaaacatggct
gcgtttgacatggacgacccagaggccgtggtgtctcccggtggcgtggggtttgacatt
aactgtggcgtccgtctgctgaggactaacctggacgagggcgacgtgcagccggtgaaa
gagcagctggcgcagtccatgtttgaccacattcccgtcggagtcgaattcggatccaag
ggcgtcattcccatgggagcaaaagatctggaggaagctctggagatgggtgtggactgg
tctctgagggaaggatatgcctgggccgaggataaagagcactgtgaggaatacggccgg
atgctgcaggccgatcccaacaaagtctcgtccaaagccaagaagagaggactgccacag
ttggggacgctgggtgcaggaaaccactacgccgagattcaggtggtggatgagatctac
aacgattacgctgcgaagaagatgggcatcgaccacaagggacagatctgtgtgatgatc
cacagcggcagtcgaggcctcggccaccaggtggccacagatgctttggttgcgatggag
aaggcgatgaagcgggataagatcacggtgaacgaccgtcagctggcctgcgctcgcatc
acgtctcctgagggtcaggactatctgaagggcatggcggccgccggcaactacgcctgg
gtcaaccgctcctccatgacctttctcacccgccaggccttctccaaagtcttcaacacc
acaccagacgatctggacatgcacatcatctacgacgtctcgcacaacatcgccaaggtg
gaagagcacatgctggagggcaaacagaagacgcttctcgtgcaccggaagggatcgacg
cgagcgttcccgcctcaccatccactcatacctgtcgactatcaggctcctgaatcctac
aagaatgtcacagacgtggtgaacacgtgccacgacgccggcatcagtaaaaaggccatc
aagctcagaccgatcgctgtgattaaaggctga
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