Sinocyclocheilus rhinocerous: 107707991
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Entry
107707991 CDS
T04916
Name
(RefSeq) hypoxia-inducible factor 1-alpha-like
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
srx
Sinocyclocheilus rhinocerous
Pathway
srx04137
Mitophagy - animal
srx04140
Autophagy - animal
srx04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
srx00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
107707991
04137 Mitophagy - animal
107707991
04148 Efferocytosis
107707991
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
srx03000
]
107707991
Transcription factors [BR:
srx03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
107707991
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
bHLH_HIF1A
PAS_3
PAS_11
HIF-1a_CTAD
HIF-1
PAS
PAS_9
PAS_4
PAS_2
HLH
Motif
Other DBs
NCBI-GeneID:
107707991
NCBI-ProteinID:
XP_016367617
LinkDB
All DBs
Position
Unknown
AA seq
766 aa
AA seq
DB search
MGTPIKQLALTSLALPQLHEWKLSWRINVSSPLSSFADNAQTDGVIQRNRQEEGVSSERR
KEKSRDAARCRRGKESEVLYELARELPLPHSVTSNLDKASVMRLALSYLHLRKLLNTDVL
NVESELDSQWNSSYLKALDGFLMVLSADGDIVYLSENVSKCLGLPQIDLTGHSVFEFTHP
CDHEELREMLAHRTGLSKKAKEQHTNRRFLLRMKCTLTSRGRTVNVKSASWKVLRCSGHI
HTTDGIKKGVCEEKNVCSTYLVLTCESIPHPANIEAPLDSRTFLSHHTLDMRFTYCDERI
TELLGFEPVDLLQHSVYEYYHALDSDHMTKTHHNLFVKGQVCTGQYRLLAKAGGFAWAET
QATVIYNSKNSQPQCVVCVNYILSGIEQPKQILSLQQTNSTKIKQEQEEHHEESLGTEVT
MAELKEEAKAKNEKREELHDSLEGEPEALTVADPVLTLDITNTESALSVLTEIPLYNDVM
LPSSSVLLPLSPLSPPCSSLNDDDASTAHLPPDDFQFPQSSPPDSSRSQVDLPVDSELSD
QLKTGHVERLFSMDIESKTPFNTQGVGLDLEMLAPYIPMDDDFQLRTVSPAESMCSSPGS
VLELTPSSSTQTAPALPAAPLDFVSCDTVPQNTRPTKQDNSREIIQDSDISSKCQTNPKL
LKRKRETIPLSEAIRLGSVLQVVTDFPEKKVRKSDASSSEGIRHATILLLPSDVASRLLS
RSSEGGAVMMPLPQLTRYDCEVNVPVTGRQHLLQGEELLCALDLVI
NT seq
2301 nt
NT seq
+upstream
nt +downstream
nt
atggggactcccattaagcaacttgcccttacaagtctggccctgccccaattacacgag
tggaagctttcctggagaatcaacgtcagcagcccactttcctcatttgcagataatgct
caaacagatggagtgattcagagaaacagacaggaagagggagtgagttcagagcgaagg
aaggagaaatccagagatgcggcacgttgtcggagaggaaaagagtcagaggtgctttat
gaactggccagagaactgcccctcccccacagtgtcacctctaacctggataaagcatca
gtcatgagactcgcactcagttacctgcacctgcgtaaactactgaacacagatgtattg
aatgtggagtctgaattagattctcagtggaacagttcatatctgaaagctctggacggg
tttctcatggttctttctgctgatggcgacatcgtctacctgtcagagaatgtcagcaag
tgtctgggccttcctcagatcgaccttactggacacagtgtgtttgagtttactcatcca
tgtgaccatgaggagctcagagaaatgctggcacacaggactggtctgtctaagaaagcg
aaggagcagcacacaaacagacgttttctattgaggatgaaatgtacactgaccagcaga
gggcgcactgtcaatgtcaaatctgcctcctggaaggtgctgcgctgttcgggccatatc
cacacaacagatggcatcaagaagggtgtgtgtgaggaaaaaaatgtgtgttcaacatac
ctggtgctcacctgtgagtctattccccacccggcgaacattgaggctcctctggattct
agaacatttctcagccaccacactttagatatgcgcttcacctactgcgatgagaggatc
acagagctgttgggttttgagccagtggatctgttgcagcattctgtgtatgaatactat
cacgcactggattctgaccacatgaccaaaacacaccacaacttgtttgtgaagggacaa
gtgtgtactggacagtaccggctcctggctaaagcaggagggtttgcttgggcagagact
caagccactgtgatctataacagtaaaaactcccagccacagtgtgtggtctgcgttaac
tacatcctcagtggcattgaacagccaaaacaaatcctgtcacttcagcaaaccaacagc
acaaaaataaaacaggaacaggaagaacaccatgaggagtcactcggaactgaagtgact
atggcagagttgaaagaggaggcaaaggcaaagaatgagaagagagaggagctacatgac
agcctggagggggagccagaggcactgactgtagcagaccctgtcctcactctggatatc
accaacacagagtctgcactctctgtgttgacagaaattcctctctacaatgatgttatg
ttgccctcttcaagtgtcctgctacctctctcacccctctctcctccctgttcctcccta
aatgatgatgatgcctccacagcccatctaccacctgacgacttccaattcccacaatct
tcgcctcctgattcttccagatcccaggtcgatctccctgtggattcagaattaagtgac
cagctaaaaacgggtcacgtggagagactattttccatggatatagagtccaagacaccc
tttaatacacagggagtgggtttggatcttgagatgttagctccatacattcccatggat
gatgatttccagctgcggactgtttctccagctgagtcgatgtgttccagcccgggttca
gtgcttgaactgaccccctccagcagcacacaaactgcccctgctctcccagcagcccct
ctagacttcgtgtcctgtgacactgttccacagaacactagacccacaaagcaggacaac
agcagggaaattattcaagacagtgatatttcttctaaatgtcagaccaacccaaagcta
ctcaaaagaaaacgagagaccatacctctgtctgaagcaataaggctgggttctgtgctg
caggtggtgactgattttccagagaaaaaggtcagaaaatcagacgcttcatcatcagaa
gggattcgtcatgccacgatactgttgctgccatctgatgttgcgagtaggttattgagc
agatcgtcagagggtggagccgtaatgatgcccctcccccagcttacccgttacgactgt
gaggtaaatgtgcctgtgactgggcggcagcacctgctacagggggaggagctactgtgt
gccttggacctagttatttaa
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