Sinocyclocheilus rhinocerous: 107710072
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Entry
107710072 CDS
T04916
Symbol
rtcb
Name
(RefSeq) tRNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
srx
Sinocyclocheilus rhinocerous
Brite
KEGG Orthology (KO) [BR:
srx00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
srx03016
]
107710072 (rtcb)
Enzymes [BR:
srx01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
107710072 (rtcb)
Transfer RNA biogenesis [BR:
srx03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
107710072 (rtcb)
Prokaryotic type
tRNA splicing ligases
107710072 (rtcb)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-GeneID:
107710072
NCBI-ProteinID:
XP_016370260
UniProt:
A0A673G2K1
LinkDB
All DBs
Position
Unknown
AA seq
505 aa
AA seq
DB search
MSRTYNDELQYLDKIRKNCWRIKKGFVPNMQVEGVFYVNDPLEKLMFEELRNACRGGGFG
GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMDDPEAVVSPGGVGFDI
NCGVRLLRTNLDEGDVQPVKEQLAQSMFDHIPVGVGSKGVIPMGAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSSKAKKRGLPQLGTLGAGNHYAEIQVVDEIYND
YAAKKMGIDHKGQICVMIHSGSRGLGHQVATDALVAMEKAMKRDKIMVNDRQLACARIMS
PEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFSKVFNTTPDDLDMHVIYDVSHNIAKVEE
HMLDGKQKTLLLHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHDAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgcacttataacgatgagcttcagtatctggataaaatccgcaagaactgctgg
cggatcaagaagggcttcgtgccgaacatgcaggtggagggtgttttctatgtgaatgat
cctctggagaaactcatgtttgaggagctgagaaacgcctgtcgcggtggagggtttggt
ggtttcttgcctgctatgaagcagattggaaacgttgccgctttgccaggaatcgtacat
cgctccatcggcttacctgatgtccactccggatatggttttgctatcggaaacatggct
gcgtttgacatggacgacccggaggctgtggtgtctcccggtggcgtggggtttgacatt
aactgtggcgtccgtctgctgaggactaacctggacgagggcgacgtgcagccggtgaaa
gagcagctggcgcagtccatgtttgaccacattcccgtcggagtcggatccaagggcgtc
attcccatgggagcaaaagatctggaggaagctctggagatgggtgtggactggtctctg
agggaaggatacgcctgggccgaggataaagagcactgtgaggaatacggccggatgctg
caagccgatcccaacaaagtctcgtccaaagccaagaagagaggactgccacagttgggg
acgctgggtgcaggaaaccactacgccgagattcaggtggtggatgagatctataacgat
tacgctgcgaagaagatgggcatcgaccacaaggggcagatctgtgtgatgatccacagc
ggcagtcgaggcctcggccaccaggtggcgacagatgctttggttgcgatggagaaggcg
atgaagcgggataagatcatggtgaacgaccgtcagctggcctgcgctcgcatcatgtct
cctgagggtcaggactatctgaagggcatggcggccgccgggaactacgcctgggtcaac
cgctcctccatgaccttcctcactcgacaggccttctccaaagtcttcaacaccacacca
gacgatctggacatgcacgtcatctacgacgtctcgcacaacatcgccaaggtggaagag
cacatgctggatggcaaacagaagacgcttctcctgcacagaaagggctcgacgcgagca
ttcccgcctcaccatccactcatacctgtcgactatcagctgacaggccagccggttctg
atcggaggaaccatgggcacctgcagttacgtgctgacgggcacagagcagggcatgacg
gagacgtttggcaccacgtgtcacggagcgggtcgagctctatccagagccaaatccaga
cgcaacttggacttccaggacgttctggataaactggcagacatgggcatcgccatcaga
gtggcgtcacccaagctggtgatggaggaggctcctgaatcctacaagaacgtcactgat
gtagtgaacacgtgccacgacgctggcatcagtaagaaggccatcaagctcagacccatc
gctgtgattaaaggctga
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