Sinocyclocheilus rhinocerous: 107711255
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Entry
107711255 CDS
T04916
Symbol
xab2
Name
(RefSeq) pre-mRNA-splicing factor SYF1 isoform X1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
srx
Sinocyclocheilus rhinocerous
Pathway
srx03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
srx00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107711255 (xab2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
srx03019
]
107711255 (xab2)
03041 Spliceosome [BR:
srx03041
]
107711255 (xab2)
Messenger RNA biogenesis [BR:
srx03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
107711255 (xab2)
Spliceosome [BR:
srx03041
]
Complex B
Other components
Prp19-related factors
107711255 (xab2)
Complex C
107711255 (xab2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
TPR_2
Suf
TPR_19
TPR_12
TPR_8
TPR_15
TPR_16
NRDE-2
ARM_TT21_C
ARM_TT21
TPR_1
ATG1-like_MIT2
Motif
Other DBs
NCBI-GeneID:
107711255
NCBI-ProteinID:
XP_016371696
LinkDB
All DBs
Position
Unknown
AA seq
849 aa
AA seq
DB search
MPTLSGKADVLFEDDDLPYEEEIIRNPYSVKCWMRYIEHKQNAQKSVLNMIYERALKELP
GSYKLWYNYLRERRKQVKGKCVTDPAYEEVNNCHERALVFMHKMPRIWIDYCQLMVSQCK
ITRSRRTFDRALRALPITQHPRIWPLYLRFARNLPLPETAIRVYRRYLKLSPENAEEYID
YLRSVGRLDEAAIRLAAVVNDENFVSKEGKSNYQLWHELCDLISQNPDKVTSLKVGAIIR
GGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAILTVVTVRDFTQVFDSFAQFEES
MIAAKMETTSELGQDEEDDIDLELRLARFESLITRRPLLLNSVLLRQNPHNVHEWHKRVK
LYEGQPRQIINTYTEAVQTIDPLKATGKPHSLWVSFARFYEDNEQLDDARTIFEKATKVN
YKQVDDLAAVWCEYGEMELRHENYDQALRILRKATAIPARKAEYFDSSEPVQNRVYKSLK
VWSMLADLEESLGTFQSTKAVYDRIIDLRIATPQIIINYAMFLEEHNYFEDSFKAYERGI
ALFKWPNVHDIWNTYLTKFIDRYGGKKLERARDLFEQALDGCPAKYAKTIYLLYAKLEEE
YGLARHAMAVYERATAAVEPEERHQMFNIYIKRAAEIYGVTHTRAIYQKAIEVLPDEHAR
DMCLRFADMESKLGEIDRARAIYSYCSQICDPRVTAHFWQTWKEFEVRHGNEDTIREMLR
IKRSVQATYNTQVNFMSSQMLKATTNATGTVSDLAPGQSGVDDMKLLEQKAQQLAAEAEQ
DKPKPKDKILFVRSDTSRSELAELAKQANPDEIDIDDDEDEDAEDGEPDEVQLEQKSVPT
AVFGGLKDD
NT seq
2550 nt
NT seq
+upstream
nt +downstream
nt
atgccaacgcttagcggaaaggcagacgttttattcgaagacgatgatttgccttatgaa
gaagaaatcatcaggaatccgtattcagtcaagtgctggatgcgttacattgagcacaag
caaaatgctcagaaatcagtgctcaatatgatctatgaaagagctttaaaagagctgcct
ggcagttacaagttgtggtacaactacctgagagagagaaggaaacaggtgaaaggcaaa
tgtgtcacagatccagcatacgaggaggtgaacaactgtcatgagagagcacttgtgttt
atgcataagatgcccaggatatggatcgactactgtcagctcatggtgtctcaatgcaaa
attacacggagcagacggacattcgatagggcgttaagagcgctacccattacccagcat
cctcgcatctggcccctgtatcttcgctttgcccgtaacttgcctctcccagaaacagct
attcgtgtttaccgccggtacttaaagttgtcacctgagaatgcagaggaatacattgat
tacctgcgttcagttggacgtctggatgaagctgcgattcggctggcagctgtggtcaat
gatgaaaactttgtttcgaaagagggaaagtccaattatcagctctggcacgagctctgt
gacctcatctcacaaaacccagacaaggtgacttcactgaaggtgggagcgattatcaga
ggaggtctcactcgctttactgaccagcttggcaagctctggtgttctctggctgattac
tacatccgcagtggacactttgagaaggctcgagatgtatacgaggaggccatcctaaca
gtagtcactgtgcgagacttcacccaggttttcgacagctttgcgcagtttgaggagagc
atgattgctgccaagatggagaccacgtctgaactgggacaagatgaagaagatgacatt
gacttggagttgcgattggcccgttttgagtcgctgataactagacgaccgcttctatta
aacagcgtgctgctgcgtcagaacccccacaatgttcacgagtggcacaagagagtcaaa
ctctacgagggccaaccacgacagatcatcaacacatacacagaagctgtgcaaacgata
gatcctttgaaagccacaggaaaacctcactctctctgggtgtccttcgccagattctat
gaggataatgaacagctggatgatgctcggactatctttgagaaggccacaaaggtgaac
tacaaacaggtggatgatcttgcagcggtgtggtgtgaatatggagagatggagctgaga
catgagaattatgaccaagcgttgcgtatactaaggaaagcaacagcgattccagcaaga
aaagcagagtattttgattcttcagaaccagtgcagaatcgagtatacaagtccctgaaa
gtgtggtccatgcttgcagacttggaagagagtcttggcacattccagtccacaaaggca
gtgtatgatcgcatcattgatctccggatcgccactcctcagatcatcattaactatgcc
atgtttcttgaagaacacaactactttgaggatagtttcaaggcatacgagcgtggcatt
gccctttttaagtggcctaatgtccatgacatctggaacacgtacctcaccaagttcatc
gaccgttatggaggcaaaaagctggagagagcgcgagatctgtttgagcaagcgctggat
gggtgtcctgctaaatatgccaaaactatctacttgctgtatgctaagctggaagaggag
tacggtctggcgcgacatgccatggctgtgtatgagagagccactgcagctgtagaacca
gaggaacgacatcaaatgttcaacatctacatcaagcgtgcagcagagatttatggagtc
actcacacaagagccatctatcagaaagccattgaggtcctgccagatgagcacgccaga
gacatgtgtctgcgcttcgctgacatggagagcaaacttggggagattgacagagcgaga
gccatctactcgtactgctctcagatctgtgatccgagggtgactgctcatttctggcaa
acctggaaggagtttgaggtacgccacggtaatgaggacacaatccgtgagatgctgcgg
attaaacgcagtgtgcaggccacatacaacacacaagtcaacttcatgtcctctcagatg
ctcaaggcaaccaccaatgctactggaacagtgtcagatcttgctcctgggcagagcgga
gtggatgacatgaagctgctggagcagaaggctcaacagctcgctgcagaggcagaacag
gacaaacccaaacctaaagacaagatccttttcgtcaggagtgacacctctcgcagtgaa
ctcgctgaactggctaaacaagctaatccagatgagattgacattgatgatgatgaagat
gaggatgcagaggatggggaaccagatgaggtgcaattggagcagaagtctgtccctact
gctgtctttggaggactaaaggatgactga
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