KEGG   Sinocyclocheilus rhinocerous: 107711331
Entry
107711331         CDS       T04916                                 
Name
(RefSeq) spliceosome RNA helicase DDX39B
  KO
K12812  ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7]
Organism
srx  Sinocyclocheilus rhinocerous
Pathway
srx03013  Nucleocytoplasmic transport
srx03015  mRNA surveillance pathway
srx03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:srx00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    107711331
  09122 Translation
   03013 Nucleocytoplasmic transport
    107711331
   03015 mRNA surveillance pathway
    107711331
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:srx03019]
    107711331
   03041 Spliceosome [BR:srx03041]
    107711331
Enzymes [BR:srx01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     107711331
Messenger RNA biogenesis [BR:srx03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     107711331
Spliceosome [BR:srx03041]
 Complex C
  Other components
   EJC/TREX
    107711331
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    107711331
SSDB
Motif
Pfam: DEAD Helicase_C ResIII CMS1 Cas3-like_C_2 AAA_19
Other DBs
NCBI-GeneID: 107711331
NCBI-ProteinID: XP_016371792
UniProt: A0A673HCD9
LinkDB
Position
Unknown
AA seq 435 aa
MTENDVENELLDYEEDEVDAGGAADTGLGHNDGLISIRKEGVKGSYVSIHSSGFRDFLLK
PELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQ
VSVLVMCHTRELAFQISKEYERFSKYMPSVKVAVFFGGLSIKKDEEVLKKESPHVVVGTP
GRILALSRNKSLNLRHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSK
EIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIF
VKSVQRCIALAQLLVEQNFPAIAIHRAMPQDERLARYQQFKDFQRRILVATNLFGRGMDI
ERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDETDARTLNDVQDRFEVNISE
LPEEIDISSYIEQTR
NT seq 1308 nt   +upstreamnt  +downstreamnt
atgacggagaacgatgttgagaatgagctgttggactatgaggaggatgaggttgatgca
ggtggtgccgcggacacaggacttggacacaacgatggcttaatatccatcaggaaagaa
ggggtcaaagggtcatatgtgtccatccactcctctggattcagggatttccttctcaaa
ccagaactgctgagagctatagtggactgtggctttgaacatccatccgaggttcagcat
gaatgcattcctcaggcgatcctggggatggatgtattatgtcaggccaagtctggaatg
gggaagacggctgtctttgtgttggccacacttcagcagctggagccagtgacagggcag
gtatcagtgttggtgatgtgtcacacccgagagctggccttccagatcagcaaagagtac
gaacgcttctccaaatacatgcccagtgtcaaggtggcagtgttctttggtggcttatct
ataaagaaggatgaggaggttctgaagaaagagagccctcatgtggtggtgggaacacct
ggacgtattctagctctgtctcgcaacaagagtctcaacctgcgccacatcaagcacttc
atcctggacgaatgcgacaagatgctggagcaactcgacatgcggcgtgatgtccaggag
atctttcgtatgacccctcacgagaagcaggtcatgatgttcagtgccaccctgagtaaa
gagatccgtcccgtctgcagaaagttcatgcaagatccgatggaaatttttgtggacgac
gagaccaagctgacgcttcacggcctccagcagtactacgtcaagctgaaggacaatgag
aagaacaggaagctctttgacctcctggacgtgttggagtttaaccaggtggtgatcttc
gtgaagtccgtgcagcgttgtattgctctggcccagttgctggttgagcaaaatttccct
gccattgccattcatagagcaatgcctcaagacgaaagattagctcgatatcagcaattc
aaggatttccagagacggatcctggtggccacaaacctgtttggccgaggtatggacatc
gaaagagtcaacatcgccttcaactacgacatgcctgaagattcagacacatacctgcac
agggttgcaagggccggcaggtttggaacgaaaggtctggccatcacctttgtgtcagat
gagactgacgcccgcactttgaatgatgttcaggacaggtttgaggtgaacatcagcgaa
cttccagaggagattgacatctcatcatatattgagcaaacacgataa

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