KEGG   Sinocyclocheilus rhinocerous: 107712117
Entry
107712117         CDS       T04916                                 
Name
(RefSeq) twinfilin-2-like
  KO
K14962  COMPASS component SWD2
Organism
srx  Sinocyclocheilus rhinocerous
Pathway
srx03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:srx00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    107712117
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:srx03019]
    107712117
   03036 Chromosome and associated proteins [BR:srx03036]
    107712117
Messenger RNA biogenesis [BR:srx03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     107712117
Chromosome and associated proteins [BR:srx03036]
 Eukaryotic type
  Histone modification proteins
   HMT complexes
    COMPASS/SET1 complex
     107712117
    COMPASS/SET1 complex (yeast)
     107712117
SSDB
Motif
Pfam: Cofilin_ADF WD40_Prp19 WD40 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_EML_2 Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 EIF3I ANAPC4_WD40 WDR55 Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd Beta-prop_TEP1_C Beta-prop_EML WD40_MABP1-WDR62_1st Beta-prop_WDR19_1st WDR90_beta-prop_4th Beta-prop_SPT8 Beta-prop_RIG_2nd Beta-prop_WDR75_1st Beta-prop_NUP159_NUP214 WD40_RFWD3 Beta-prop_IFT140_1st WD_LRWD1 Beta-prop_HPS5 PQQ_2 MinC_C WD40_2
Other DBs
NCBI-GeneID: 107712117
NCBI-ProteinID: XP_016372743
LinkDB
Position
Unknown
AA seq 622 aa
MKLTDNVLRSFRVAKVFRENSDKINCFDFSSNGETVISSSDDDSIVLYDCQEGKPKRTLY
SKKYGVDLIRYTHAANTVVYSSNKIDDTIRYLSLHDNKYIRYFPGHNKRVVALSMSPVDD
TFISGSLDKTIRLWDLRSPNCQGLMHLQGKPVCSFDPEGLIFAAGVNSEMVKLYDLRSFD
KGPFATFKLQYERTCEWTGLKFSNDGKLILVSTNGGTLRVLDAFKGAVLHSFGGYNNSKG
VILEASFTPDSQFVMIGSEDGKIHVWNAESGMKVALLDGKHTGPVTCLQFNPKFMTFASA
CSNMLVLGAYREPRQSWDKDYDHFLLPLLDPHEPCYILYRLDTKNAQGYEWLFISWSPDQ
SPVRQKMLYAATRATVKKEFGGGHVKDEMFGTVEEDVCLQGYLRHVTSCSEPAPLTAAEQ
ELQRIKITEGRVKQVKTEISVDPKHQTLQGLAFPLQAEAKRALQQLAERRINYIQLKLDT
EKETIELVHTSPTELRDLPCRIPLDTPRYHFFLFKHSHEGDYLESVVFIYSMPGYSCSIK
ERMLYSSCKSRLLEEVERDFHLEVAKKLEIDSGEELTEEYLYDEVHPKQHAHKQAFAKPR
GPAGKRGNKRLIKGGEENGGNS
NT seq 1869 nt   +upstreamnt  +downstreamnt
atgaagctcacagacaatgtgctgcggagttttagggttgcgaaggttttccgagagaat
tcggacaaaatcaactgctttgacttcagttcaaatggcgaaactgtaatatcgagtagc
gatgacgattcgattgtcttgtacgactgccaggagggaaaacccaaacggacgctttac
agtaagaagtatggtgtggatctcatcagatacacccatgcagccaacactgtcgtctac
agctccaacaagattgatgatactattcgatacctgtccctacatgacaataagtacatt
cgatactttcctggacacaataagagggttgttgctctgtctatgtctcctgttgatgac
acattcatttctggctcacttgataaaactattcgtctgtgggaccttcgctcacctaac
tgtcagggcctcatgcacctgcaagggaagcctgtgtgttcatttgatccggaggggttg
atttttgctgcaggagtgaattctgagatggtcaaactttacgatctacgctcctttgat
aagggtccattcgccacgtttaaactacaatatgagcgaacatgtgagtggacgggcctc
aagttcagcaacgacggaaagctcattctggtctccaccaatggtggaacactcagagta
ctggatgctttcaaaggagcagtgctccactcatttgggggctataataacagtaaaggt
gtcattctggaggcctctttcacgccagactctcagttcgtcatgatcggatcagaagat
ggaaagatccatgtgtggaatgctgagagtggaatgaaagtagcacttcttgatgggaag
cacactggtccagtcacctgtctacagtttaaccccaaattcatgacctttgccagtgcc
tgttctaacatgctggtgctgggggcatacagagagccacgtcagagctgggacaaagac
tatgaccacttcctgctccctctgctggaccctcacgagccctgttacattctataccgg
ttggacaccaagaacgctcaaggctatgagtggctcttcatctcctggtcacctgaccag
tctcctgtccggcaaaagatgctgtacgctgccactcgcgccacagttaagaaagagttt
ggtggtggacacgtcaaagatgaaatgttcggcacagttgaggaggacgtttgtcttcag
gggtacctgagacacgtgacttcatgttctgaaccagcacctctgacagcagctgaacaa
gagctacagcgaatcaaaatcacagagggcagagttaagcaggtgaaaactgagatcagt
gtggaccccaaacatcagactctacagggtcttgccttcccgttacaggccgaggctaaa
cgtgctctacagcagctcgcagagagacgcatcaactacattcaactaaagctagataca
gagaaggagacaattgaactcgtgcacaccagcccaacagaactccgtgacctaccctgc
cggatcccccttgatacacccagataccacttcttcctcttcaaacattcacatgaggga
gactacctcgagtctgtggtattcatatactccatgccaggatacagctgcagcatcaag
gaaaggatgctgtattccagctgtaagagtcgacttttggaagaagtagagagggacttc
catctagaagtggctaaaaagttggagatagatagtggagaggagctgacagaggagtat
ctgtatgatgaggtccatcctaagcagcatgcccacaagcaagcattcgccaaacctcgt
ggccctgctgggaagaggggaaacaaacgtctaatcaagggaggtgaagagaacggtggc
aacagctag

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