Sinocyclocheilus rhinocerous: 107712124
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Entry
107712124 CDS
T04916
Name
(RefSeq) symplekin-like
KO
K06100
symplekin
Organism
srx
Sinocyclocheilus rhinocerous
Pathway
srx03015
mRNA surveillance pathway
srx04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
srx00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
107712124
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
107712124
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
srx03021
]
107712124
03019 Messenger RNA biogenesis [BR:
srx03019
]
107712124
Transcription machinery [BR:
srx03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
107712124
Messenger RNA biogenesis [BR:
srx03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
107712124
U7-dependent histone pre-mRNA processing factors
107712124
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
Cohesin_HEAT
Rep_Org_C
SCD
Motif
Other DBs
NCBI-GeneID:
107712124
NCBI-ProteinID:
XP_016372754
LinkDB
All DBs
Position
Unknown
AA seq
894 aa
AA seq
DB search
MASGVGEQAHGSVASQFSSNENDTAFDMTTSEKVVELLNQAALISTEEKLIVLKQVQELI
INKDPSLLDNFLDEIIAFQTDKSIEVRKFVIGFIEEACYTLCEEGKLALEQLLKFMVHPA
ISSINLTTALGSLATLARQRPMFMSEVVQAYETLHANLPPTLAKSQVSSVRKNLKLHLVS
VLKHPSSVDFQGQISTLLLDLGMSQSEITRCTPATVQPRKRLHHEPYVEGKRIKMEATLV
EDDDDKEEPAPVVTPKPSSSAGTQSSIDLTAEFLLPLLNPENVANLVLISMVYLPEVMPA
SFQATYTPVESAGTDAQIKHLARLMATQMTAAGLGPGLELCKARDEEVKEEDGGAGESSS
KDPLIIRKLSAVSLVRAPGASGRKKVFKLADVVQPFSEAQIEKLANMAIKRILQSEKAIA
QSGKSHVRVKLLARLVTQFEDGKKNDLLQFILEDMRGRSELAFSLLFHEYNEYLSQQPSG
SLDSYEHCLFTLLSGLQEKPEQRDGLFTKLVLEAPVITDSALEVIQRYCEDESRVYLGMS
TLKELILKRPSRQYQYLNVLLNLSSHEKEKVRSTALSFIKRMYEKEHLKDCIEKFALTYM
QFLVHPNPPSLLFGAGEDTEVAAPWTEETVRQCLYLYLSLLPLNHCLVHELAAVYTEAIA
DIKRSVLRVIEQPIRGMGMSSPDLLLLVEDCPKGAETLVTRCLHILTDKVPPSPELVERV
RDLYHKRVPDVRFLIPVINGLEKVSTNLCFGEKNVYTSEVLAVVMQQLMEQTPLPILLMR
TVIQSLSMYPRLAGFVMNILARLILKQVWKYPKVWEGFVKCCQRTKPQSYNVLLQLPPPQ
LASVFERCPEMREPLLQHVHSFTPHQQAHIPASLIFCLEYISGLCITSDQHKDF
NT seq
2685 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcaggtgtgggagaacaagcgcatggtagcgtggcctcccagttctccagcaat
gagaacgacacagcctttgacatgaccaccagcgagaaggtggtggaattgttaaaccag
gcagcactcatctctacagaggaaaagcttattgttctcaaacaggtgcaggagttgatt
atcaacaaggacccttcattgcttgataattttctggatgaaatcatcgcatttcagact
gataagtcaattgaggtgcgaaagtttgtcatcggattcattgaggaggcatgctacacc
ttgtgtgaggagggaaagttggctctggagcagttgttaaagtttatggtgcaccctgcc
atctccagcattaatctcaccactgcacttggatcactggctacgctggccagacagcgg
cccatgttcatgtctgaggtggtgcaggcatatgagacgctacatgctaacttgcccccg
actctggctaagtctcaagtgagcagtgtgcgcaagaacctgaagctgcacttggtctca
gtgctgaagcaccccagcagcgtggacttccagggccaaatttccactctgctgttggac
cttggtatgtctcagagcgagatcacccgctgcacgccagccacggtacagccccgtaag
agactccaccatgagccctatgtcgagggcaagaggatcaagatggaggccactctagtg
gaggatgatgatgataaggaagaaccagctccagtcgtcaccccaaaaccatcctcctcc
gctggcacccaatcatccatcgacctcactgctgagttcctgttgcctctgctgaaccca
gagaatgtggccaacctggtgctcatcagtatggtttacctgcctgaagtgatgccggcc
tctttccaggccacctacacacctgtagaatcggccggcactgatgctcagatcaaacat
ttagccaggctgatggccacacagatgactgcggctggactgggaccagggctggagctg
tgtaaggctcgagatgaagaggtgaaggaggaagatggcggagcgggtgagtccagctcc
aaagaccctctcatcatccgcaaactgtctgctgtgtccctggtcagagctcctggggcc
agtggcagaaaaaaagtgttcaaattggctgacgtggtgcagcctttctcagaggctcag
atcgagaaactcgccaacatggccatcaagcggatccttcaatcagaaaaggccattgca
cagagtgggaagtcccatgtccgtgtgaagttgcttgcacggttggtgacccagtttgag
gatgggaagaaaaatgacttgttgcagtttattttggaggatatgcggggcagaagtgag
ctggccttttctctgctgttccatgagtacaatgaatacctgagtcagcagccctcgggc
tctctggacagctatgagcactgtctgttcacactgctgtccggcctgcaggagaaacct
gagcagagggatgggcttttcaccaagcttgtgttggaggctccggtcattacagactct
gcactggaggtgattcaacgctactgtgaggacgagtcacgtgtttacctgggcatgtcc
acattaaaggagcttatcctcaaacgcccctccagacagtaccagtacctcaatgtcctt
ctgaacctcagctctcacgaaaaagaaaaggtgcggtccactgctctcagcttcatcaag
cgcatgtatgagaaggaacatctgaaggactgcattgagaagttcgctctgacctacatg
cagtttctggtccacccaaacccaccttctcttctgtttggagcaggagaggatacagag
gtggcggctccctggacagaggagacagtgcggcagtgtctttacctctatctctccctc
cttcccctcaaccattgtctggtgcacgagctggctgccgtctacaccgaggccatcgcc
gacatcaaacgcagtgtgctcagggtcattgaacagcctataagaggaatgggaatgagc
tctcctgacctgctgctcctggtggaggactgtcctaaaggagcggagacgctggtcact
cgctgtctgcacatactcactgataaagtgcctccatctcctgagctggtggagagggtg
agggatctttatcataagcgagtgccagatgttcgtttcctcatcccggtgatcaatggc
ctggagaaggtttccactaacctgtgttttggggagaagaacgtgtacacctctgaggtg
ctggctgtggtgatgcagcagctgatggagcagacccctctccccatactgctgatgcgt
acggtcatccagtccctctctatgtaccctcgcctggccggcttcgtcatgaacatccta
gcccgactcattctcaaacaggtgtggaagtatcctaaagtgtgggagggctttgtaaag
tgctgccagcgcaccaaaccccagtcctacaacgttctcctccagctgcctccaccacaa
ctggctagtgtgtttgagcgctgcccggagatgagggagcctctcctacagcacgttcac
tccttcacccctcaccaacaagcccacattccagcatctcttatattctgtctagaatat
atttctggcctctgcatcacatctgatcaacacaaagatttttag
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