Sinocyclocheilus rhinocerous: 107713181
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Entry
107713181 CDS
T04916
Name
(RefSeq) DNA repair protein RAD50-like
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
srx
Sinocyclocheilus rhinocerous
Pathway
srx03440
Homologous recombination
srx03450
Non-homologous end-joining
srx04218
Cellular senescence
Brite
KEGG Orthology (KO) [BR:
srx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
107713181
03450 Non-homologous end-joining
107713181
09140 Cellular Processes
09143 Cell growth and death
04218 Cellular senescence
107713181
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
srx03032
]
107713181
03400 DNA repair and recombination proteins [BR:
srx03400
]
107713181
DNA replication proteins [BR:
srx03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
107713181
DNA repair and recombination proteins [BR:
srx03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
107713181
BRCA1-C complex
107713181
NHEJ (non-homologous end-joining)
MRX complex
107713181
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_23
Rad50_zn_hook
AAA_21
AAA_15
SbcC_Walker_B
SMC_N
ABC_tran
Intein_splicing
AAA_29
AAA_13
AAA_16
Motif
Other DBs
NCBI-GeneID:
107713181
NCBI-ProteinID:
XP_016374101
LinkDB
All DBs
Position
Unknown
AA seq
1312 aa
AA seq
DB search
MSRIEKMSILGVRSFGVEDKDKQVITFFSPLTVLVGPNGAGKTTIIECLKYITSGDFPPG
SKGSTFVHDPKDAHETDVQAQISLKFRDVNGDPVAVQRSMQSTQKGKQTEFKTLEGVIKR
FKHGKKVSPIPKCAEMDREMISALGVSKAVINRVIFCHQEESNWPLSEGKALKQKFDDIF
SATRYIKVLETLRALRIKQASIVKTCQTELKYLKQNKDKAQEIRELLSNKEAQLASSKES
VQRIESQIDPLENRMYDIDSSLSRVMKLDIDIKALDSRKKQMEDDNRELEEKMEQVFQGT
DDQLQDMYQNHQRTVKEKERRLAECQRDLERAGRECQRMNRIKSDLLVEQGRLQLEADRH
TQNIKKRDTQVKSLASFLELEGYDRTPLNERQLQSFHRQVKERLDQDTEALNQIMHDMQE
KEAQKQQSIDDLRDKKTGLERTIELKRDIQAKKQQELKNIKSDLQRLEGSSSRLQELETE
LQKAERELDNAVQACTVDSLKVEVVELQKEKTELDQAQRKLDQEMELLNTHTAARTQMDM
LKKTKIEKEEQVRKIKSKHNEELVSLMGHFPSKKELEDWINSKSKEINSTRDRLNKMNKE
LASGEQKKTHFTAEVRRKEEQLASYEERIFNVCGSQDFESDLNKLEDELEKCSKQRAMLA
GATAVYSQFISQLTEEGEPCCPVCQRVFPSEAELQDVINDMQSKLRLIPDKLKNTEHDLK
RKEHRHDEIMALKPIRQSIAELQEKELPELRNKLQCVNRDIEKLKGDTEEQETLLCTLMS
EEDTAKACLQDISLMDRYQLDLKDVERKIAQHAARLQGVDLSRTMQQVSQEKQETQHRLD
TTCSKIELKRKLIQDQQEQIQALRSSVNEIRGEKLQISSNMQKRQQLEEQCVEFSTEIQT
LHRDIQDAKEQVSPLAATLEKLQQEKQDHAERRRQKQEEGREKINGIKEKVKNLTLLERE
ITKYIEERKDSYKEQKETELQEVDKQLHEAEKQREKINKDIGNIRQDIDTQKVQERWLQD
NLTLRKRVEELKEVSRKREDLVKEMGNMQVLQLRNERREVERKLEDLKKNRSVALGRQKG
YEDEILRFRKELSEDQYCRAEDLYRDQMIVMRTTELANKDLDIYYKALDQTIMKFHSMKM
EEINKIIRDLWRSTYRGQDIEYVEIRSDVDENASAGLKRRTYNYRVVMVKGDTALDMRGR
CSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDRENIESLAHALVEIIKSHSRQR
NFQLLVITHDEDFVELLGRSNYVEHFYRIRKNQDQCSEITKCNINTLNSYLH
NT seq
3939 nt
NT seq
+upstream
nt +downstream
nt
atgtctcggatcgaaaagatgagtatcctgggagtaaggagttttggagttgaggataaa
gacaaacaagtgatcaccttcttcagccctctgacggtccttgtggggcctaatggagct
gggaaaacgaccatcatcgaatgtctcaagtacatcacttcaggagactttccaccagga
agtaaaggaagcacattcgtccatgatcccaaagatgcccatgagacggatgtacaggca
cagatcagtctcaagtttagagacgtgaatggcgatcctgtggctgtccagaggtctatg
caaagcacacagaagggcaagcaaacggagttcaaaacccttgagggtgtcattaaaaga
ttcaagcacggaaagaaagtgagcccgatccctaaatgtgctgaaatggaccgtgagatg
atctcagcactgggcgtctccaaggctgttatcaaccgtgtcatcttctgccaccaagag
gagtccaactggcctctcagtgaaggaaaggccctcaagcagaagtttgatgacattttc
tcagccacaaggtacattaaggtattggagaccctgcgggcactgaggattaagcaggcc
agcattgtcaaaacctgccagacggagctcaagtacctgaaacagaacaaagataaagcc
caagagattagagagctgctgtccaataaagaggctcagctggcttcctctaaagaaagt
gtccaacgcatcgagagtcagatagacccactggagaatcgaatgtatgacatagacagt
agcctcagcagagtgatgaagttggatattgacatcaaagctttggacagcaggaagaaa
cagatggaggatgataaccgggaactagaggaaaagatggaacaggtgttccagggcaca
gatgatcagctgcaggacatgtatcagaaccaccagaggacagtgaaggagaaggaacgg
agacttgcggagtgccagcgtgatcttgaacgtgccggccgagagtgccagaggatgaac
cgcatcaaatctgacctgctagttgagcaaggccgtctgcagttggaggcagatagacac
acacaaaacattaaaaagagggacacccaggtcaagagtttagcatctttcctggagttg
gagggttatgaccggacccctcttaatgagcgacagctccagagcttccacagacaagtc
aaagagagactggaccaggacacagaggcccttaaccaaattatgcatgatatgcaggag
aaagaggcacagaagcagcaaagcatcgatgatctccgagataaaaagacaggtctagag
agaaccattgagctgaagagagacatacaggccaagaaacaacaggaactgaaaaacatc
aaatctgacctccagagactggagggctcctcaagcagactacaggagctagaaactgaa
cttcagaaagcggagcgtgagcttgataatgccgtacaggcctgtacggtggacagtcta
aaggtagaggtagttgaactacagaaggagaaaactgaactggatcaggcccagcgcaag
ctagaccaggagatggaattgctcaacacgcacaccgcggcacgcacacagatggacatg
ctcaagaagaccaagatagaaaaagaggagcaagtgaggaagatcaagtcgaaacataat
gaagagctggtgtctctgatgggacacttcccaagcaagaaagagctagaagactggatc
aactccaaatccaaagagatcaactccaccagagaccggcttaacaaaatgaataaggag
cttgcatctggagaacagaagaagactcactttactgcagaagtcagacgtaaggaagag
cagctggccagctatgaagagagaattttcaatgtgtgcggcagtcaggactttgagtcg
gacttgaacaaactggaggatgagttggagaagtgttccaaacagagagctatgctggcg
ggtgccacagccgtgtacagtcagttcatcagtcagctgacggaggagggcgagccctgc
tgtcccgtgtgtcagcgtgtgttcccgtcagaggcagagctccaagacgtcattaatgac
atgcagtccaagctgcggctcatcccagacaaactaaagaacactgagcacgacctgaag
aggaaggagcacaggcatgatgaaattatggcactgaagcccatcaggcagtccatagcg
gagctccaggagaaagagctgccagagctcagaaataaactccagtgtgtgaatcgagac
attgagaagctaaaaggagacactgaggagcaagagaccctgctgtgcacactgatgtct
gaggaagacacagccaaggcctgtcttcaggacatatcactcatggatcgctatcagctt
gacctgaaggatgtagaaaggaagatcgctcaacatgcagccaggctgcagggagttgac
ctcagccgcaccatgcagcaggtcagccaggagaaacaagagacccaacaccgcctggac
accacctgcagtaagatcgagctgaagaggaaactgatccaggaccagcaggagcagatc
caggccttgaggagcagtgtaaatgagattcgtggagaaaagctccagatctccagcaat
atgcagaaacgtcaacagttggaggagcagtgtgtggagttctccactgagatccaaaca
ctccacagagacattcaagatgcaaaggagcaggtgtctcctctagctgccactctggag
aagctccagcaggagaaacaggaccatgctgagcgcaggagacagaaacaggaggaagga
cgggaaaagataaatggaatcaaggaaaaagttaaaaacttgaccctccttgaaagagag
attaccaagtacatagaagagagaaaggacagctacaaagagcaaaaagaaactgagcta
caagaggtggacaaacaactacacgaggctgaaaaacagcgagagaagatcaataaagac
attggcaacattcgacaagatattgacactcagaaggttcaagagcgctggctgcaggac
aacttgaccttacgaaagcgtgtggaggagctgaaagaggtgtccaggaaacgtgaagac
ttggttaaggagatgggcaacatgcaagttctgcaactgcgcaatgagcggcgagaagtg
gaacgaaagttggaggacctaaaaaagaaccgcagtgtggctctcggtcgacagaaaggc
tacgaagacgagatcctccgttttcgtaaagagctcagtgaggatcaatattgccgggcc
gaggatctctacagagaccaaatgattgtgatgagaacaacagagttggccaataaggac
ctggacatctactataaagccctagaccagacaataatgaagtttcacagcatgaagatg
gaggagattaataaaatcatcagagatctatggcggagcacgtacagaggacaagacatt
gagtatgtggagatacgctctgatgtggatgagaacgcctccgctggcctgaaaagaagg
acctataactatagagtggtaatggtcaaaggagacactgctttggacatgcgtggacgt
tgcagtgctggacaaaaggttcttgcctctctcataatacggttggctctggctgagacg
ttttgtctgaactgtgggattctggcgctggatgagcccaccaccaacctagacagagag
aatatagagtctttggcacacgcactggtggagataatcaagagtcattctcgccaacgc
aacttccagctccttgttatcacccacgacgaggattttgtggagctcctgggacggtcc
aactatgtggagcatttctacaggatcaggaagaaccaggaccagtgctcagagatcacg
aaatgtaacatcaacactctcaactcctacctgcactga
DBGET
integrated database retrieval system
