Sinocyclocheilus rhinocerous: 107713350
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Entry
107713350 CDS
T04916
Name
(RefSeq) superkiller viralicidic activity 2-like 2
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
srx
Sinocyclocheilus rhinocerous
Pathway
srx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
srx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107713350
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
srx03019
]
107713350
03041 Spliceosome [BR:
srx03041
]
107713350
03009 Ribosome biogenesis [BR:
srx03009
]
107713350
03016 Transfer RNA biogenesis [BR:
srx03016
]
107713350
Enzymes [BR:
srx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
107713350
Messenger RNA biogenesis [BR:
srx03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
107713350
Spliceosome [BR:
srx03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
107713350
Complex C
U4/U6.U5 tri-SnRNP related factors
107713350
Ribosome biogenesis [BR:
srx03009
]
Eukaryotic type
Pre-60S particles
Helicases
107713350
Transfer RNA biogenesis [BR:
srx03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
107713350
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
AAA_22
nSTAND3
Motif
Other DBs
NCBI-GeneID:
107713350
NCBI-ProteinID:
XP_016374319
LinkDB
All DBs
Position
Unknown
AA seq
1034 aa
AA seq
DB search
MADAFGDDLFSVFDEEQAGSSKKDTPKLAAQAGSKSPDKAGKQQGDSAAVRKRDADNDGP
DEVVLGKRQKLETVSAEEINLSELMPKVKAEQVETVEGCTHEVVLPADEEYTPLKPRVGK
AAKEYPFILDPFQREAILCIDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFTSPI
KALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREVAWVIF
DEIHYMRDSERGVVWEETIILLPDNVHHVFLSATIPNARQFAEWICHLHKQPCHVVYTDY
RPTPLQHYIFPAGGDGLHLVVDENGEFREDNFNTAMQVLRDAGDTGGNVGGKWDPKGRKG
GTKGPSNVFKIVKMIMERNFQPVIIFSFSKKECEAYALQVAKLDFNTDDEKKLVGEVFNN
ATDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLLKALFATETFA
MGINMPARTVLFTSARKFDGKDFRWITSGEYIQMSGRAGRRGMDERGIVIFMVDEKMSNI
INVLTGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAVPGVVEKMKKL
EEEYNAIRIPNEESVVTYYKIRQQLAKLGKEIEEFIHKPRYCLPFLQPGRLVRVKKEDLD
FGWGIVVNFHKKTNVKAGGGDADPLFVVEVLLHCSKDSVKNAATEAAKPAGPGEKGEMQV
VPVILHLITSISSVRLYIPKDLRPYDNRQSMLKSIQEVQKRFPDGVPLLDPIDDMGIKDP
ALKKVIQKVEAFEHRMYTHPLHSDPNLEAVYTLCEKKALIAGDIKAAKRELKKARTVLQM
DELKCRKRVIRRLGFATSSDVIEMKGRVACEISSADELLLTEMVFNGLFNDLTAEQATAL
LSCFVFQENASEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLDVDEDTYLNQFRPHLMD
VVYTWANGSSFSQICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFATGIT
KIKRDIVFAASLYL
NT seq
3105 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgcctttggagacgatttgttcagcgtgtttgatgaagaacaggccggttct
agcaaaaaagacactccgaagttggccgctcaggcaggcagtaagagtcctgataaagcg
gggaaacagcagggtgattcagctgctgtgcgcaaaagagatgctgacaatgatggtcca
gatgaggtggtgcttgggaagagacagaagctggaaacagtgtcagctgaggagatcaat
ctgtcagagctcatgcctaaagtgaaggcggagcaggtggagacagtggagggctgcact
catgaggtggttcttcctgcagacgaggaatacactccactgaaaccacgcgttggaaaa
gcagctaaggagtaccccttcatactcgaccctttccagcgtgaggccatcctgtgcatc
gataacaaccagtctgtgcttgtgtcagcccacacatcggcaggaaagacagtgtgtgct
gagtatgccattgctctggctctccgagaaaagcagcgagtgatcttcaccagccccatc
aaagctctgagcaatcagaagtacagagagatgtacgaagagttccaggatgtgggtctg
atgaccggtgacgtcaccattaaccccacggcttcctgcctggttatgaccaccgagatt
ttgaggagcatgctgtacagagggtcagaggttatgagggaggtggcatgggtcatcttt
gatgagatccattacatgagagactcagagcgtggagtggtctgggaggaaaccatcatc
ctactgccagacaacgtgcatcatgtcttcctgtcagccaccattcccaacgctcgacag
tttgctgagtggatttgtcacctccacaaacagccctgccacgtggtgtacacggattac
cggcccactccactgcagcactacatctttccagcaggtggcgatggactccacctggtt
gtggatgagaacggagagttcagagaagacaattttaacacggcaatgcaggtcctgagg
gacgcgggggacacgggaggcaatgttgggggcaaatgggaccccaaaggcagaaagggt
ggaaccaaaggtccatccaatgtctttaagattgtgaagatgatcatggaaaggaacttc
cagccggtgatcatctttagcttcagtaagaaagaatgtgaggcttacgcactgcaggtg
gccaaactggatttcaacacggatgacgagaagaaactggtgggagaagtgttcaacaac
gccacagactgcctgtctgatgaagacaaaaagctgccacaggtggagcatgttctgccg
ttgctgaagagaggaattggaattcatcatggcggcctcctcccgatcctgaaagagacc
attgagatcctgttctctgaggggctgctaaaggccttgtttgctacagaaacatttgcc
atgggaatcaacatgcctgcaagaaccgtactcttcaccagtgcacgcaaatttgacggc
aaagacttccgctggatcacctctggagagtatatccagatgtcgggacgtgccggcaga
agaggaatggatgagagaggaatagtcattttcatggtggatgagaagatgagtaatatt
ataaatgtcttaactggttcggcggatcctctgaacagtgcgttccacctgacctacaac
atggtgctcaatctactgcgtgtggaggagatcaacccagagtacatgctggagaaatcc
ttctaccagttccagcactatagagctgtgcctggtgttgtggagaagatgaaaaagctg
gaggaggagtataatgcaatacgaatccctaacgaagagagcgtggtgacttactacaag
atccgtcaacagctggccaaactaggcaaagaaatcgaggagtttattcataaacctaga
tattgcctgcccttcctgcagccaggcagactggtcagggtgaaaaaagaagatctggat
tttggctggggtatagtcgtcaatttccacaagaagacaaatgtcaaggctggaggtggt
gatgccgacccgttgtttgtggtagaggttctgcttcactgcagcaaagacagcgtgaaa
aacgcggccacagaggcagccaaaccggcaggcccaggagaaaagggcgagatgcaggtt
gttcctgtgattctacatctcatcacctccattagctctgtgcgcctctacatcccgaaa
gacctgcggccgtacgacaaccgacagagcatgctcaaatccatacaggaggtgcagaaa
cgtttcccagatggcgttcctctgctagatcccatagacgacatgggtatcaaggatcca
gcgctgaagaaggtcattcagaaggtggaggcgttcgagcaccggatgtacacgcacccc
ctgcacagcgaccccaacctggaggccgtttacactctgtgtgagaagaaagcactgatt
gcaggcgacattaaagcggcgaagcgcgagctaaagaaagcacgtaccgtgctgcagatg
gacgagctgaagtgcaggaagcgtgtgatacggcgcctgggattcgccacttcctctgat
gtcatcgagatgaaaggccgtgtggcctgtgagatcagcagtgcagatgagctgctgctg
acagagatggtgtttaacgggctgttcaacgacctgacggcggagcaggccaccgcgctc
ctcagctgctttgtcttccaggaaaacgctagcgagatgcccaaactgacggagcagctg
gccggaccgcttcgacagatgcaggaatgtgccaagcgtattgctaaggtgtccgcagag
gccaagctggacgtggatgaggacacttacctgaaccagttccgcccgcacctgatggat
gtggtctacacctgggccaacggctcctcattctctcagatttgcaaaatgacagacgtg
tttgaaggcagtattatccgctgcatgcgtagattggaggagctcttgaggcagatgtgc
caggcagccaaggccattggaaacacagagctggagaataagtttgccacgggtataacg
aagattaagagggatatcgtgtttgctgccagtctttacctgtga
DBGET
integrated database retrieval system
