Sinocyclocheilus rhinocerous: 107715436
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Entry
107715436 CDS
T04916
Name
(RefSeq) collagen alpha-1(II) chain-like isoform X1
KO
K19719
collagen type II alpha
Organism
srx
Sinocyclocheilus rhinocerous
Pathway
srx04510
Focal adhesion
srx04512
ECM-receptor interaction
srx04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
srx00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
107715436
04518 Integrin signaling
107715436
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
107715436
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
srx00536
]
107715436
Glycosaminoglycan binding proteins [BR:
srx00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
107715436
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
TILa
Motif
Other DBs
NCBI-GeneID:
107715436
NCBI-ProteinID:
XP_016377067
LinkDB
All DBs
Position
Unknown
AA seq
1490 aa
AA seq
DB search
MILLVDSRTLLLFVATLVAFLAIVKCQEEDDQDPGSCTQDGQFYRDKDVWKPEPCRICVC
DTGAVLCDEIICEELKDCPKPEIPFGECCPVCAADQPSSPGLPGAKGQKGEPGDITDVVG
PRGPAGPMGPPGEQGPRGDRGEQGEKGNPGPRGRDGEPGTPGNPGPPGPPGPNGPPGLGG
NFASQMAGGFDDKAGGAQMGVMQGPMGPMGPRGPPGPNGSPGPQGFQGNPGEAGEPGSFG
PMGPRGPSGPPGKPGDDGEAGKAGKAGDRGPLGPQGARGFPGTPGLPGIKGHRGYSGLDG
AKGESGATGSKGEAGSPGESGAPGPMGPRGLPGERGRPGSSGAAGARGNDGSPGAAGPPG
PVGTAGAPGFPGSPGAKGEAGPTGARGPEGAQGPRGESGVPGSSGPSGLSGNPGTDGLPG
AKGSVGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQSGDLGLAGFKGEAGPKGEIGNAG
PQGALGPAGEEGKRGLRGEPGALGPLGPSGERGAPGNRGFPGQDGLAGPKGALGERGAPG
GSGPKGASGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAAGEDGRPGPPGPQGARG
QPGVMGFPGPKGGNGEAGKSGEKGLAGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQG
QPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAAGATGPRGERGFPGERGGVGPQGLQG
PRGLPGTPGTDGPKGAVGPAGSPGAQGPPGLQGMPGERGTSGIPGPKGDRGDNGEKGPEG
APGKDGTRGLTGPIGPHGPAGPNGEKGESGPAGPSGAAGTRGVPGDRGETGPFGPAGFAG
PPGADGQPGVKGEQGEGGQKGDAGAPGPQGPSGAPGPQGPTGVSGPKGARGAQGPPGATG
FPGSAGRVGPPGPNGNPGPAGPAGPPGKDGPKGVHGDGGPPGRPGDAGLRGPAGTPGEKG
DPGEDGPHGPDGPAGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGGPGDRG
PPGPVGAPGLTGPAGEPGREGNPGSDGPPGRDGSAGIKGDRGDTGPAGAPGAPGGTGAPG
PVGPTGKQGDRGEAGPKGPAGPLGPAGARGMPGPQGPRGDKGEVGDSGERGQKGHRGFTG
LQGLPGPPGQPGDQGASGPAGPGGARGPPGPVGPAGKDGTNGLPGPIGPPGPRGHSGETG
PAGHPGNPGSPGLPGPPGPGIDMSAFAGLSHPEKAPDPLRYMRADQAAEGNVQHDAEVDA
TLKSLNNQIENIRSPDGTKKSPARTCRDLKHCHPDWKSGEYWIDPNQGCTVDAMKVFCNM
ETGETCIYPKPANIPRKNWWTSKGAEHKHVWFGEAMNGGFHFGYGDDNLAPNTASIQMTF
LRLLSTEASQNLTYHCKNSVAYMDEATGDLKKALLLQGSNNVEIRAEGNSRFTYTVLEDG
CKKHTGQWSKTVIEYKSQKTSRLPIVDIAPMDIGGANQEFGVDVGAVCFL
NT seq
4473 nt
NT seq
+upstream
nt +downstream
nt
atgatcctgttggtggattctaggactttactgctatttgtggcaacactagtcgcattt
ttggccattgtcaaatgccaagaggaggatgaccaagatccaggcagctgtacgcaggac
ggccagttctatagggacaaggacgtgtggaaaccagagccgtgtcgcatctgtgtttgt
gacaccggcgcggtcctgtgcgacgaaatcatctgtgaggagctgaaagactgtcccaaa
cccgagatcccgtttggggagtgctgtccagtctgtgccgctgaccagccttcctcccct
ggcttgccaggtgctaagggacaaaagggggaaccaggagacataacagatgttgtggga
ccgaggggaccagccggtcctatgggaccaccaggagaacaagggccgcgaggagacaga
ggagagcagggggagaagggaaatccaggcccccgtggcagagatggtgagccggggacc
cctggaaaccccggccctcctggaccgcctgggccaaacggacctccaggcctcggtgga
aactttgcttctcagatggctggtggatttgatgacaaagctggaggagcacaaatggga
gtgatgcaaggaccaatgggtccgatgggtcctcgaggaccaccaggccccaatggatct
cctggcccacaaggatttcaaggcaaccctggagaagccggagagcccggatccttcggc
ccaatgggtcctcgtggcccctctggtcccccaggaaaaccaggagatgatggggaagca
ggcaaagctgggaaagctggtgaccgtggacctctcgggcctcagggagctcgtggattc
ccaggaacaccaggtctacctggaatcaagggacacagaggttattcaggtcttgatggt
gctaaaggagagtccggagccactgggtcaaaaggtgaggccgggtctcctggagaaagt
ggtgctcctggaccaatgggcccacgtggtttacctggtgaacgggggcgtccaggatca
tccggagctgctggtgctcgtgggaatgatggttcacccggcgctgctggtcctcctggt
ccagtcggtacggctggcgctcccggtttcccaggatcccccggtgctaagggtgaagca
ggacctaccggagcccgtggacctgagggagcacaaggaccccgcggagagtctggtgtc
cccggatcttcaggaccttctggactctctggtaaccctggtactgatggcctgcccgga
gccaaaggatcagtgggtgctccaggcatagctggcgctcctggtttcccaggccctcgc
ggccctcctggacctcagggagcaactggacctctggggccgaagggacagtctggggat
ctgggtctcgcagggttcaagggtgaggccggtcctaaaggagaaattggtaacgctggg
cctcaaggtgcccttggccctgccggagaggaagggaagcgaggactcagaggagagcct
ggtgctcttggacccctcgggccgtctggagagagaggagctcctggtaatcgaggtttt
cctggacaagatggtctggctggtccaaagggcgctctgggcgagcgtggagctccagga
gggtcagggccgaagggagccagcggagatcctggccggcctggagaaccgggtctgcct
ggtgcacggggtctgacgggacgtccaggtgatgctggtccacagggcaaagttggtccc
tctggtgctgctggtgaagacggtcggccaggacccccaggccctcagggtgctcgcggg
cagcctggagtgatgggattccctggacccaagggtggcaatggtgaggctgggaagtct
ggagagaagggactcgctggagctcctggtttgcgtggtctgcccggtaaagacggtgag
acgggtgctgccggaccccctggacctgctggtcctgcaggagagagaggagagcagggt
cagcccggaccctctggctttcagggtctgcccggacctcctggcccccctggtgaaggc
ggtaaacctggtgatcagggtgttccaggagaggctggtgctgcaggggccaccggacca
cgcggtgagcgtggtttcccaggagagagaggaggtgtggggccgcagggcctccagggg
cctcgaggtcttccaggaactccaggaactgacggacccaagggtgccgtcggcccagcg
ggatctcctggtgctcagggacctccaggactacagggaatgcctggagagagagggaca
tctggcattcctggaccaaagggtgacagaggtgacaatggtgagaaaggacctgaagga
gctcctgggaaagatggcacaagaggtttaacgggtccaatcggcccccatggtcctgcg
ggacccaatggtgaaaagggagaatctggacctgcaggaccgtctggagctgctggtact
cgcggtgttcctggtgacagaggagagactggtccttttggtcctgctggttttgctggt
ccacctggtgcagatggacagcctggcgttaagggagagcagggtgaaggtgggcagaag
ggtgatgctggtgcaccgggccctcaggggccttctggagctccaggtcctcagggacca
actggtgtgtctggaccaaaaggggctcgcggtgctcaaggacctcctggtgccacaggt
ttccctggatccgctggtagagttggacctcctggacccaatggtaacccgggtcccgct
ggtcctgctggtcctcctggtaaagatggtccaaagggtgtgcatggtgacggtggacct
cctggaagacccggtgacgctgggctgcgtgggccggctgggactcctggcgagaaggga
gatcctggagaagatggccctcatggtccggatgggcctgcaggtcctcagggtctggct
ggccagcgtggtattgttggacttcctggacagcgtggtgaaagaggtttccccggcctg
cctggaccctctggtgagcctggtaaacaaggagctcctggtggacctggagaccgtgga
cctcctggacccgtgggagcgcctggtctgacaggacctgctggggaacctgggagagag
ggcaatcccggatctgatggtcctcctggccgagacggttctgcaggaataaagggtgac
agaggtgacactggtccagctggtgctcctggtgctccaggtggtactggtgctcctggt
ccagtcggacccaccggcaaacagggagacagaggagaggccggacctaaaggacctgct
ggacctctagggcctgctggagctcggggaatgcctggcccacaaggcccgcgcggagat
aagggagaggttggcgattcaggtgagagaggacagaaaggacacagaggtttcaccggt
cttcagggtctgcctgggcctcctgggcaacctggtgaccaaggagcttctggacctgct
ggacccggtggagcaagaggacccccaggccctgttggtccagctggaaaagatggaacc
aatggtttgcctggacccatcggaccccctggacctcgtggccattctggagagactggg
ccagccggccacccaggaaaccctggttcccccggtctccctggcccaccagggcctggc
atcgacatgtctgctttcgctggtttgtctcatcctgaaaaggctcctgatcctttgagg
tacatgagggcagaccaagccgccgaaggtaatgttcagcatgatgcagaggtcgatgcc
actctgaaatccctgaacaaccagattgagaacatccgcagtcctgatggtactaaaaag
agcccggcccggacctgcagagacctgaaacactgccacccagactggaagagcggtgaa
tactggattgatcctaaccagggctgcaccgtagatgctatgaaggtgttctgcaacatg
gagaccggtgagacctgcatttatcctaaacccgccaatatcccacgcaagaactggtgg
acttccaagggagctgaacacaaacacgtttggtttggagaagccatgaatggtggattc
cattttggctatggagacgacaatctggcacctaacacagcaagcattcagatgactttc
ctaagactgctgtccacagaggcctcgcagaacctcacctaccactgcaagaacagcgtg
gcctacatggatgaggccactggagacctgaagaaagctctgctgctgcagggatccaat
aatgtggaaatccgagctgagggcaacagccgcttcacatatactgttcttgaggatggt
tgcaagaaacacacaggacaatggagcaagacggtcatcgagtacaaatcccagaagact
tcacgcctacccattgtggacattgcaccgatggatattggaggagcaaatcaggagttt
ggagtggatgtgggtgccgtctgtttcttgtaa
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integrated database retrieval system
