Sinocyclocheilus rhinocerous: 107715445
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Entry
107715445 CDS
T04916
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16-like
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
srx
Sinocyclocheilus rhinocerous
Pathway
srx03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
srx00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107715445
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
srx03041
]
107715445
Enzymes [BR:
srx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
107715445
Spliceosome [BR:
srx03041
]
Complex C
Other components
Step II factors
107715445
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
AAA_22
AAA_19
nSTAND3
T2SSE
Flavi_DEAD
AAA_16
AAA_30
PhoH
AAA_7
SRP54
ATPase
Motif
Other DBs
NCBI-GeneID:
107715445
NCBI-ProteinID:
XP_016377075
LinkDB
All DBs
Position
Unknown
AA seq
1235 aa
AA seq
DB search
MEDDSSLHRLEGSDPSVQVGGLIVKKKSASTEQHVFRAPAPRTSLLGLDLLAAQKRKERE
GKESLDDQPKKSKVSSYKDWEEGQSDSGSDDENQEDGDSRNGKKERKYRVTGSETPSNPG
GVSEEFKQKHQQREKDRREHGVYASSKEDKSRDKDRSRDRDRDHDRYRDRDRRRDRDERE
SSRGRGSSSSRSERGDGSVRSERSQRDGSSDRMSRGTRRDEPESPHNRSKDLATPSRSSW
DEDDSGYSSSRHSHWESPSPAPSHREYDRSERSHRSVRDSERRDRSSKPQYPAETPLPTP
SYKYNEWANDRKHLGSTPRLSRGKGDKREDREDGILFTNEEEKEQWEEDQRQADRDWYMM
DEGFDEFHNPLTSSSEEYVKKREQILQKQTQKRISAQKRQINEDNERWETNRMLTSGVVQ
RLEVDEDFEEDNATRVHLLVHNLVPPFLDGRIVFTKQPEPVIPVKDATSDMAIISRKGSQ
LVRRHREQKERKKAQHKHWELAGTKLGDIMGIKKTEEDGSDGKAVGEDGNVDYRAEQKFA
DHMKEKNEASSEFAKKKTLLQQRQYLPIFAVRQQLLNIIRDNNIVIVVGETGSGKTTQLT
QYLHEDGYTSYGMVGCTQPRRVAAMSVAKRVSEEMNSNLGEEVGYAIRFEDCTSEKTVIK
YMTDGILLRESLRESDLDHYSAVIMDEAHERSLNTDVLFGLLREVVSRRSDLKLIVTSAT
MDSDKFAGFFGNVPIFHIPGRTFPVDILFSKVPQEDYVEAAVKQSLQIHLSGMVGDILIF
MPGQEDIEVTSDQIVERLEDLENAPALAVLPIYSQLPSDLQAKIFQKAPDGVRKCIVATN
IAETSLTVDGIMFVVDAGYCKLKVFNPRIGMDALQVYPISQANANQRAGRAGRTGPGQCY
RNVSLATVSHCVWLGHVFHFMDPPPEDNMLNSMYQLWILGALDNTGALTPTGRLMVEFPL
DPALSKMLIVSCDMGCSADILIIVSMLSVPSIFYRPKGREEESDQVREKFSVPESDHLTY
LNVYLQWKNNNYSSIWCNDHFIHTKAMRKVREVRSQLKDIMVQQKMNLVSCGSDWDVIRK
CICAAYFHQAAKLKGIGEYVNVRTGMPCHLHPTSALFGMGYTPDYIIYHELVMTTKEYMQ
CVTAVDGEWLAELGPMFYSIKHAGKSRQENRKRAKEEITNMEEEMSLAQEQIRARKEEQE
RKSNLGSVRSIKIFTPGRREEAPMTPKRTPARFGL
NT seq
3708 nt
NT seq
+upstream
nt +downstream
nt
atggaagatgattcctccctgcatcgactggaagggagtgaccccagtgttcaggtcggg
gggctgatagtgaagaagaagagtgcttcgacagaacagcatgtgttcagagctcccgct
ccacgcacctcgctcctgggcctcgatctgctggccgcacagaaacgcaaggagcgcgag
ggcaaggaaagtctggatgatcaacccaagaaatccaaggtgtcgtcctacaaggactgg
gaggagggacaaagtgattcggggtctgatgatgaaaatcaagaagatggcgatagcagg
aatgggaaaaaggaaaggaagtaccgtgtcactggctcagaaacaccctcaaacccagga
ggggttagtgaggagttcaagcagaagcatcaacagagggagaaggacagacgtgagcat
ggggtttatgcgtcctccaaagaagacaagagcagagacaaagaccgatccagagacagg
gacagagaccacgatcgctaccgtgaccgagacagaaggagagaccgagatgaacgggaa
agcagccgcggccgtggctcaagcagcagtcgctctgagcgcggtgatggcagcgtgagg
agtgaacgctcgcagagggacggctcgtccgaccgcatgagtcgtggtactcgccgcgat
gagcccgaatcaccccacaacagatccaaagatttggccactccatcacgctccagctgg
gatgaggatgacagtggatattccagctcacgccactctcactgggagagcccgtctcct
gccccgtcacaccgggagtatgaccgctccgagcgcagccatcgctcagtccgtgacagt
gagaggagagacaggtcaagtaaacctcagtatccagcagaaactcctctaccaacccca
tcatataagtacaacgagtgggccaatgacaggaagcaccttggctccaccccacgcctg
tccagaggaaaaggcgataagagggaggatagagaggacggcattctatttactaatgaa
gaagagaaggaacagtgggaggaagatcagcggcaagctgatcgagactggtacatgatg
gatgaaggttttgatgagttccacaaccccttgacatccagttcagaagaatatgtgaag
aagagggagcagatcctacagaagcagacccagaaacgcatctcagcgcagaaacggcaa
atcaatgaggataacgaacgctgggagaccaaccgcatgctcaccagtggagtggttcag
cgtttggaggtggatgaggacttcgaggaagacaatgcaaccagagtgcatctgcttgtc
cataacctcgtgccacccttcctggacgggaggatagtcttcactaagcagcctgagccg
gtcattccagtgaaagacgcgacctcagacatggccatcatctcccgcaagggcagtcag
ctggtccgacgacaccgagagcagaaagaaagaaagaaggcacaacacaaacactgggaa
ctcgctggcaccaaactgggagacatcatgggaatcaagaaaaccgaggaggatggatca
gatggaaaagctgttggagaagatggaaatgtggattacagagcggagcagaagtttgct
gaccacatgaaggagaagaatgaagcgagcagtgagtttgctaagaagaagactctatta
cagcagaggcagtatctgcccatctttgctgttcgccagcagctgctcaacatcatcagg
gataacaatattgtgattgtggtgggggaaacgggcagtggtaagacgactcagctgacg
cagtatctacatgaggacggttacaccagctatggcatggtgggctgcacacagccccgc
agagtggcagccatgagcgtggccaagagagtcagcgaagaaatgaacagtaacctggga
gaagaggttggttatgccatccgttttgaagactgtacatcagagaagactgtaataaaa
tacatgacggatgggattcttctgagggaatctctgcgggagtcagatctggaccactat
agcgcggtaatcatggacgaggcccatgagcgctccctcaacactgatgtgctcttcggg
ctgctccgagaggtggtgtctagacgctcagacttgaagctcattgtcacatctgccacc
atggactcggacaaatttgcaggattcttcggcaatgttcctattttccacattcccggc
aggacgttcccagtggatatcttgttcagcaaggttcctcaggaggactatgtggaggcg
gctgtgaaacagtccttacagattcatctcagcgggatggtgggtgacatcctcatcttc
atgcctggtcaggaggacattgaggtgacgtcagatcagattgtggagcgactggaggat
ctagagaacgctccggccctggcagtgctgcccatctactcccagctgccctctgacctg
caggccaagatcttccagaaggctcctgatggagtgaggaagtgtattgtcgctacaaac
atcgctgagacgtctctgaccgtggacggcatcatgtttgtggtggatgctggttactgc
aaactgaaggtgttcaatccccgtattggcatggatgcgctgcaggtttaccccatcagt
caagccaatgcaaaccagcgggctggaagagcaggaagaacaggcccaggacagtgttac
agaaatgtatcactcgccactgtatcacattgtgtctggcttggacatgtcttccacttc
atggacccgccgcctgaagacaacatgctgaactccatgtaccagctgtggatcttggga
gcgcttgacaacacaggcgctctgacgcccaccgggcggctcatggtggagtttcctctg
gatccggctctgtctaaaatgctgatcgtgtcatgtgacatgggctgcagtgccgacatt
ctcatcatcgtctcgatgttgtctgtgccgtcaatcttctaccgaccaaagggtcgagag
gaggagagtgaccaggtgagagagaagttctcggtgcctgagagtgatcacctgacctac
ctcaacgtttacctgcagtggaagaacaacaattactccagcatctggtgtaacgatcac
ttcatccacaccaaagctatgagaaaggtgcgtgaggtgcgatctcagctcaaagacatc
atggtgcagcagaaaatgaacctggtctcctgcggctcagactgggatgtgatcaggaaa
tgcatctgtgctgcgtactttcaccaggctgctaaattaaagggaataggggagtatgtg
aacgtgagaactgggatgccctgccatctgcaccccaccagcgctttgttcgggatgggc
tacacccccgactatatcatctaccacgagctggtcatgaccacaaaggagtacatgcag
tgtgtgacggcagtggacggcgagtggctggctgagctggggcccatgttctacagtatc
aaacatgcaggaaagagcagacaggagaaccgaaagagagccaaggaggagatcaccaac
atggaggaggagatgtctcttgcacaagaacagatccgtgcacggaaagaggagcaggag
aggaagagcaatctgggcagcgtcaggtcaataaagatcttcaccccaggaaggagagag
gaagcgcccatgacaccaaaacgaacaccagcccgatttggcttatag
DBGET
integrated database retrieval system
