Sinocyclocheilus rhinocerous: 107715912
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Entry
107715912 CDS
T04916
Name
(RefSeq) collagen alpha-1(IV) chain-like isoform X1
KO
K06237
collagen type IV alpha
Organism
srx
Sinocyclocheilus rhinocerous
Pathway
srx04510
Focal adhesion
srx04512
ECM-receptor interaction
srx04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
srx00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
107715912
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
107715912
09142 Cell motility
04820 Cytoskeleton in muscle cells
107715912
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
srx04147
]
107715912
00536 Glycosaminoglycan binding proteins [BR:
srx00536
]
107715912
Exosome [BR:
srx04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
107715912
Glycosaminoglycan binding proteins [BR:
srx00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
107715912
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
107715912
NCBI-ProteinID:
XP_016377659
LinkDB
All DBs
Position
Unknown
AA seq
1640 aa
AA seq
DB search
MRLACVTVFLLTVSLSIDESTAKGGCSGSSCGGCDCSGVKGAKGEVGLPGLMGLVGFPGL
PGPEGPPGPMGPKGDSGEPGAPGLKGNRGPPGVAGFPGLPGIPGLPGLEGAPGPHGIPGC
NGTKGERGFDGISGVLGAKGPPGIPGLKGVKGDPGGIIGVPIPQKGDRGLPGQPGSPGLI
GNPGQQGLIGPPGPMAPPGRPGEPGQKGEPGDKLTFEGEKGQKGEKGLTGPPGPPGRSEE
HEGPGTTIYIPGTPGEIGSKGEKGERGFCAPHQHRMKGEPGPPGPIGKPGKEAQNGEKGD
RGFPGTPGFDGFKGDKGERGPPGYGGGRPGPPGPSGPPGAEGETGYPGERGDPGPPGRYI
PGPPGPPGFPGEIGQKGDKGADGLSLEGPRGADGQPGPPGPPGQINEDCNIEKGAQGPLG
PPGLQGEIGQKGDQGETCTECTVFGPPGLPGSPGPKGQQGYPGQAGSKGEKGVTGPPGPA
GIPGQGGSPGLMGAPGAQGEPGDVFVAPGLKGDKGLPGTTGDRGFPGADGFSGKDGRPGQ
PGPKGEPARFGIKGDRGLDGDRGLPGPPGERGPPGLSGIGRPGEPGEKGSAGLLGAPGRP
GLPGAKGEAGKTISLPGPQGAPGPRGETGRPGLQGDTGFPGERGVSGLPGDKGDPGLPGI
GLPGHPGPKGYSGIPGPAGIPGEPGRPGQDGLPGRVGTPGQKGEPGRGLPGPKGTIGQPG
LPGFPGEKGNPGMPGVPGTEGSTGPTGLQGTKGNPGPPGARGAVGPPGPPGLGEPGPPGA
MGPPGDPGPLGRIGIKGEKGYQGLPGLDIPGPPGDRGSPGVPGVPGSKGLPGEQGPPGGD
GFPGERGPKGEFGIMGITGHPGPLGPVGNPGEPGPKGDSGLTGVRGVFGDPGPKGERGEQ
GLQGPPGNMSDVDMEHMKGEKGDIGDRGDPGPSGEKGFPGTPGDPGMSGKDGMPGSPGQP
GAKGDPGVPGEPGQTGEPGDPGSRGDMGYPGSVGPKGIKGVGGSTGHSGFKGSDGPKGDK
GEPGAAGIGIPGPPGEKGNVGAPGFSGEPGHKGQKGTLGIPGTSGTQGPKGDTGLIGYPG
SPGKPGEKGVSGFPGSPGEPGFQGRPGDPGLQGPPGQPGEKGEPGVDGIPGFVGERGEPG
IPGTGLPGTHGEPGSKGDQGNPGLPGIPGSPGIPGTKGEKGLTGFPGDQGWPGERGLPGS
SMEGPKGDRGAQGQPGEQGATGEPGTSGIPGSAGAKGEKGDVGFPGPQGSQGYTGDKGFT
GTPGEPGLPGYNGPKGEMGPQGVAGFPGTKGEQGVIGPRGDGGDRGFLGLKGSEGPPGPP
GPHTYIKGDPGLPGPQGPTGIVGIQGFPGPKGQQGVTGIQGIKGSDGTPGYNGHPGAKGE
PGQTGPSGPRGYPGPPGPSGFPGGIGPPGPASMDHGFLVTRHSQSVDVPQCPEGTTLIYD
GYSLLYVQGNERSHGQDLGTAGSCLRKFSPMPFLFCNINNVCNFASRNDYSYWLTSPEPM
PMSMAPVTGESIKPFISRCAVCEAPAMVIAMHSQTIQIPPCPRGWDSLWIGYSFVMHTSA
GAEGSGQALASPGSCLEEFRSAPFIECHGRGTCNYYANSYSFWLATIEDNEMFSKPVPTT
LKAGNLRTHISRCQVCMKRV
NT seq
4923 nt
NT seq
+upstream
nt +downstream
nt
atgcggcttgcatgtgtaaccgtttttcttctcacagtctctttgagcatagacgagagt
acagctaagggtggatgctcagggtcttcatgtggtggatgtgactgcagtggtgttaaa
ggtgcgaagggtgaggttgggctccctggtttgatgggcctcgtgggatttcctggatta
ccagggcctgagggtcccccagggccaatgggaccaaagggagattcaggggagccagga
gctccaggacttaaaggaaacagaggcccacctggtgtggctggtttcccaggacttcca
ggtattccaggtcttccaggtctagaaggtgcaccaggacctcatggaatcccaggctgc
aatggaacaaagggggagcgtggttttgacggaatttcaggggttctgggcgctaaagga
ccaccgggcattccaggtttgaagggagtaaagggagatccaggtggtattattggagta
cccatccctcaaaaaggagacaggggcttgccaggacaacctggttcaccaggactaata
ggtaatcctggacaacaagggctaatcggcccacctggaccaatggcacctccaggaagg
cctggtgaacctggccaaaagggagagccgggtgacaagctgacgtttgagggtgagaaa
ggacaaaagggagaaaaaggtttaaccggtccccctggtccaccagggagatcagaggaa
catgaaggccctggaacaacaatttatattcctggaacaccgggtgaaataggctctaaa
ggagagaaaggggaaaggggtttttgtgcaccacatcaacatagaatgaaaggtgaacca
ggaccaccagggccaatcgggaaaccagggaaagaggcacagaatggagaaaagggggat
cggggcttccctggtactcctggctttgatggctttaagggggacaaaggagaaagagga
ccaccaggatatggtggtggtcgtcctggccctcctggtccttctggcccccctggagca
gaaggagagacaggttatccaggagaacgtggagatcctggtcccccaggccggtatatt
cctggtcctcctggacctcctggcttccctggagagattggccagaagggcgataaagga
gctgatggactgtctcttgaaggtccaagaggagctgatggacaacctggcccccctgga
ccaccaggacagatcaatgaagactgtaatattgaaaaaggagctcaaggcccccttgga
cctcctgggttgcaaggagagataggacagaaaggtgatcaaggtgaaacatgcacagag
tgcactgttttcgggccaccaggtttgcctggttctccagggccaaagggtcagcaaggt
tatcctggacaagcggggagtaaaggagagaagggtgtgacaggacctcctgggcctgct
ggaattcctggtcaaggtggctctccaggtttaatgggtgcccctggtgctcaaggggag
cctggtgatgtctttgtggctccagggctgaaaggagataagggtttacctggtactact
ggagacagagggtttccaggtgctgatgggttctcagggaaagatggccggccagggcaa
cctggaccaaagggagagcctgctagatttggtattaagggtgatcgtggcctggatgga
gatcgtggtcttcccggtcctccgggtgagagaggtcccccaggtctttcaggcataggt
cggccaggtgaacctggtgaaaaaggctcagcaggtttgcttggtgcaccaggaaggcca
ggattaccaggagctaaaggtgaagctggtaaaactataagtttacctggacctcagggt
gccccaggacctcgtggagagactggcagacctggacttcaaggtgacacaggttttcca
ggtgaacgtggagtttcaggactcccaggagacaaaggtgaccctggactgccaggaatc
ggccttcctgggcacccaggaccaaaaggatactctgggattccaggtcctgctgggatt
ccaggagagcctggtcgaccaggtcaggatggcttgcctggtcgtgtagggacacctggg
caaaaaggtgaacctggcaggggtcttcctggtcctaaaggtaccataggtcagccagga
ttgccaggatttccaggggagaagggtaatcctggaatgccaggggttcctggaactgag
ggaagtactgggccaactggactacagggaaccaaaggtaatcctggaccacctggagct
cgtggtgcagtggggccgccaggtcctccagggcttggagaacctggaccacctggagca
atggggccacctggagaccctggaccccttggtcggatcggtataaaaggtgagaaaggt
tatcaaggcctacctggtttagacatacctggccctccaggagacaggggtagccctggt
gtcccaggtgtcccaggatctaaaggtttgccaggggaacaaggacctccaggaggagat
ggcttccctggtgaacgtggtccaaaaggagaatttggaatcatgggaattacaggacac
cctggacctttaggtcctgttggaaaccctggagagccaggaccaaaaggtgactctggt
ttgactggggtcaggggagtgtttggtgatccaggtcccaagggtgagagaggagagcag
ggtctacaggggccacctggaaacatgagtgatgttgacatggaacacatgaaaggggag
aaaggagacatcggagacagaggtgatcctggtccttccggagaaaaggggtttcctgga
acgcctggagaccctggaatgtcaggaaaagatggaatgccaggttcacctggacagcca
ggtgcaaaaggagaccctggagtccctggggagccaggacaaactggagaacctggagac
ccaggttcgagaggagacatgggatacccaggttcagtggggccaaaaggtattaaaggt
gttggtgggtcaacgggtcactctggatttaagggttctgatggccccaaaggagataaa
ggagagcctggtgcagcaggaataggcatccctggtccccctggagagaagggaaatgtt
ggtgcccctggtttctctggtgaacctggacataagggacagaagggtacattgggcatc
ccaggaacttctggaactcaaggacctaaaggagacacaggattgattggttacccaggc
agtccagggaaaccaggtgagaaaggtgtcagtgggtttccagggtctccaggagaacct
gggtttcaaggacgtccaggtgaccctggtctacagggtccaccaggtcagcctggggag
aaaggcgaaccaggggtagatggcattcctggattcgtaggagagagaggagaacctggt
atacctggtacaggtttgccaggaacccatggagaacctggcagcaaaggtgaccaaggc
aaccctggtcttcctggcattcccgggagtccaggtattcctggaaccaaaggtgagaag
ggtctgactggattcccaggggaccaagggtggcctggagagagaggacttccaggatca
tctatggaggggcctaaaggggaccggggagctcagggacagccaggagaacaaggtgcg
actggtgaaccaggcacatctggcatacctggcagtgctggagctaaaggagaaaaggga
gatgtgggcttccctggcccacaaggctctcaagggtatacaggagacaaaggtttcact
ggtactcctggtgagcctggattgcctggttataatggaccaaagggtgagatgggacca
cagggtgttgctggtttccctggtacaaagggtgagcaaggagtgatcggtcctaggggt
gacggaggtgacagaggattcctaggtcttaaaggcagcgaaggcccccctggaccccct
gggccacacacatatataaagggagatcctggtcttccaggacctcagggtcccacgggt
atagttggaattcaaggcttccctggtccgaaaggacaacagggtgtgacgggaattcag
ggtataaaaggatccgatggaacacctggctataatggacatcctggggccaaaggagag
cctggacaaactggaccctctggccccagagggtaccctggacctccaggacctagtggt
ttcccaggtggcatcggccctcctggccctgcctcaatggaccacggcttccttgtaacc
cgccacagtcagagtgttgatgttccacaatgtccagagggaacgacgctgatctatgat
ggatattcgctgctttatgtccagggcaacgagaggtcacatggacaagacctaggtaca
gctggtagctgcctaaggaagttcagcccaatgcctttcctcttctgcaacatcaacaat
gtatgtaacttcgcttctcgtaatgactattcctattggctcacctctcccgagcccatg
cccatgagcatggcccctgttaccggtgagagcatcaaacccttcatcagcagatgtgca
gtttgtgaggctcctgctatggtgatagctatgcacagtcagaccatccagatcccacct
tgccctcgtggttgggattctctctggattggatactctttcgtcatgcacaccagtgct
ggtgctgagggctccggtcaggctctggcctctccgggttcttgtctggaagagttccgc
tcggcacccttcatcgagtgtcacggtcgcggcacctgcaactattacgctaactcctac
agcttctggttagccactatagaggacaacgaaatgtttagcaaacctgtccctacaacg
ctaaaggctgggaatctacgaactcacatcagcaggtgtcaagtgtgcatgaagagggtt
tag
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integrated database retrieval system
