Sinocyclocheilus rhinocerous: 107716413
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Entry
107716413 CDS
T04916
Name
(RefSeq) PAB-dependent poly(A)-specific ribonuclease subunit PAN3-like isoform X1
KO
K12572
PAB-dependent poly(A)-specific ribonuclease subunit 3
Organism
srx
Sinocyclocheilus rhinocerous
Pathway
srx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
srx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107716413
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
srx03019
]
107716413
Messenger RNA biogenesis [BR:
srx03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
107716413
mRNA degradation factors
3'-5' decay
Pan complex
107716413
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Pan3_PK
zf-CCCH
zf-CCCH_4
zf_CCCH_4
Torus
Pkinase
zf-CCCH_2
Motif
Other DBs
NCBI-GeneID:
107716413
NCBI-ProteinID:
XP_016378342
UniProt:
A0A673GDE2
LinkDB
All DBs
Position
Unknown
AA seq
801 aa
AA seq
DB search
MNSGLPAPAAPLGGVGIPGVKVKFCRYYAKDKTCFYGDECQFLHEDPSMASLSLHGGGTG
AGGGGSPVSLSLAGGAVTAAGYVLGSSAASGAPANVPKKNDSLGPAGTALEGQLLSIPGM
EGGALNDASLTNSYFSSTFIGVNGFGGPAESKYSMMQRMTSSSSSPSLLNDGAKSFSHNT
HDPLNSPASSLFSDFGALSISQRRKAPNPTASEFVPKGAPRMASMSQTTVPAAFASPIFP
HPGLSSSTVAALAPGMSLSAGSSPLHSPKITPHTSPAPRRRSHTPNPNPANYMVPTSASD
QGGAAHVIQKETVGGTTYFYTDNTPAPLAGMVFPTYHMYPQTAPHVAYMQPKANAPSFFM
ADELRQELINRHLITMAQIDQSENLGVPSEVDSYHSLFPLEPLPPPNRLQKTSNFSYITS
CYKAVNSKDDLPYCLRRIHGFRLVNTKCMMLVDMWKKIQHSNTVTLREVFTTKAFGDHSL
VFSYDFHAGAETMFSRHFNDPAADSYFTKRKWGQHELPPPRQHAGLLPESLIWAYIVQLS
SALRTIHTAGLACRVMDPSKILITGKTRLRVNCVGMFDVLTFDNSQTNHLALMPQYQQAD
LISLGKVVLALACNSLAGIKRENLQKAMELVSINYSSDLKNLILYLLSEQSRLRSVNDIM
PMIGARFYTQLDASQMRNDVIEEDLAKEVQNGRLFRLLAKLGTINERPEFQKDPTWSETG
DRYLLKLFRDHLFHQVTEAGTPWIDLSHIVSCLNKLDAGAPEKVSLVSRDEKSVLVVTYS
DLKRCFESTFQELLAATNGPL
NT seq
2406 nt
NT seq
+upstream
nt +downstream
nt
atgaacagtggactcccagctccagctgctccgctcgggggtgtcggaatacccggtgtg
aaagtgaaattctgccgttattatgcgaaagacaagacttgtttttacggagatgaatgc
cagtttctgcacgaggacccgtccatggcgagcctttctctgcacggtggtggtacaggt
gctggcggaggaggaagccccgtctctttatctctcgccggaggagcagtgacggcggcg
ggatacgtgctcggaagtagcgcggccagcggcgctccggcaaacgttcccaaaaagaac
gattctctcggtcccgcgggaacagctctggagggacagctgttgtccatccctgggatg
gagggaggtgctctgaatgatgccagtctgaccaactcatacttcagcagcacctttatt
ggggtcaatgggtttggaggcccagcagagtccaaatattcaatgatgcagaggatgacc
agcagtagcagttctccgagtctactgaacgatggcgccaagagcttcagccacaacaca
catgatccactaaattccccagcgtcatctctcttcagtgattttggtgctttgagcata
tcacaaaggagaaaggctcctaaccccacagccagtgagtttgtacctaaaggggcccca
cggatggcctccatgtctcagacgaccgtgccagcagcattcgcctcccccatcttccct
catcctggcttgagcagctccacagtggctgctcttgcacctggtatgtcactctctgct
gggtcatctcctcttcactcccccaaaatcacccctcacacctctccagccccacggcgg
cgcagtcacacacccaaccccaacccagccaattacatggtgcccaccagtgcatctgat
cagggaggtgcagcccacgtgattcaaaaggagactgtgggtgggacaacttacttctat
accgacaacacccctgctcctttggccggaatggtgttcccaacatatcacatgtatccg
caaacggcacctcatgtggcatacatgcagccaaaagccaatgcaccatccttctttatg
gctgacgaacttcgacaggagctgattaacaggcatttgataacgatggcacagatagat
cagtctgagaaccttggagtgccgtctgaggtagacagttaccacagcctctttcccctg
gaaccccttcccccaccaaaccgtcttcagaaaaccagcaacttcagttacatcacttcc
tgttacaaggcagtcaacagcaaagatgacctgccttactgcctcaggaggatacatggc
ttcaggctggtcaacaccaagtgtatgatgctggtagatatgtggaagaagattcagcac
tccaatactgtgacccttcgagaggtcttcaccaccaaagcatttggagaccactcactg
gtattttcctatgacttccatgcgggggcggagaccatgttcagcaggcacttcaacgat
ccggcagcggattcttacttcacaaagagaaagtgggggcagcatgagctccctcctcca
cggcagcatgcgggcctgttaccggagtcgctgatttgggcctacattgtccagctgagc
tcggcattgcgcaccattcacacggctgggctggcctgcagggtcatggaccctagtaag
atcctcatcactggaaagacacggttacgagtcaactgtgtaggaatgtttgatgtctta
acatttgacaatagtcagaccaaccacctggctctgatgccccagtaccagcaagcagat
ctcatctccctggggaaggtggtgttggctctggcgtgtaactctctagctggcattaag
agagaaaatttgcagaaggccatggagctggtgtcaatcaactactcatctgacctcaag
aacctcattctgtacctactctcggaacaaagccgtctgcgcagtgtcaatgacattatg
cccatgattggagcacgattttacactcaactcgatgcctcgcaaatgagaaacgatgtc
attgaagaggacctggccaaggaggttcaaaatgggcgattgttccgcctactggcaaag
ttgggaacgatcaacgagagaccagagttccagaaggacccaacgtggtctgagactggt
gaccgttacctgctgaagctctttagagatcacctgttccaccaggtaactgaggcaggc
acgccctggatcgacctcagccacattgtgtcctgcctcaataagttggatgctggagca
ccggagaaggtcagtctggtgtcacgggatgagaagagcgtgcttgtggtgacttactca
gacctgaagcggtgctttgagagcaccttccaggaactgctggccgccacgaacggtccc
ctgtaa
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