Sinocyclocheilus rhinocerous: 107716836
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Entry
107716836 CDS
T04916
Name
(RefSeq) CCR4-NOT transcription complex subunit 3-like isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
srx
Sinocyclocheilus rhinocerous
Pathway
srx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
srx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107716836
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
srx03019
]
107716836
Messenger RNA biogenesis [BR:
srx03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
107716836
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
107716836
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF4407
Motif
Other DBs
NCBI-GeneID:
107716836
NCBI-ProteinID:
XP_016378913
LinkDB
All DBs
Position
Unknown
AA seq
893 aa
AA seq
DB search
MADKRKLQGEIDRCLKKVTEGVEQFEDIWKKLHNAANANQKEKYEADLKKEIKKLQRLRD
QIKTWVASNEIKDKRQLVENRKLIETQMERFKVVERETKTKAYSKEGLGLAQKVDPAQKE
KEEMEQWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKEKQDRIEELKRLIERHRYHI
RMLETILRMLDNDSIQVEAIHKIKDDVEYYIDSSQDPDFEENEFLYDDLDLEELPATLMA
TSPQGHIEDEMFLQSSSTPTSTTSSSPIPPSPGTGTMEILEDKRGRSTDSEVSQSPVKNG
NPSLSSFSSSASSGSSSSSSSLVSMATVVVGCTAVSGGSSLLGSFSSAVQQHAPQSQQQA
QVKLSSTSVPSNNTPSPPSHPTLPASTTSSLPSSSTPGPVTSNSQSQASSVPGVEGSRLG
LGLGKGGVTVISSSSGAQMPGLGMAGMSGSLNTMAGLLSGSTPAPYAQAAAGGTAGSVSS
GPVGSGSVSSGISVPSAGAGGANTGATSNGTGTGAGIGLLGSSPGHSTLTGGILNLVPGQ
TALQASAQIPVSHVGTAPGGGTGESVLSGNGSSSVASAGVGTNVAPARPASGLKQNGATS
YSAVVADNTPDSSLSSASQSQISHSSSSSSSTSQTLDNGPSLLSSITLPPSSPSPAFTDG
TPGGGSLLNGPHSYTLNTEAIKTPEPPSSLKAMAERAALGLTLDGEISSLHLPDRAPPGP
TTAPQPAVSEVNLPPSLGACPLGPTPLTKEQLYQQAMQEAAWIHMPHPSDSERIRQYLMR
NPCPTPPFHHQVPPHHSDSIEFYQRLSTETLFFIFYYLEGTKAQYLSAKALKKQSWRFHT
KYMMWFQRHEEPKTITDEFEQGTYIYFDYEKWGQRKKEGFTFEYRYLEDRDLQ
NT seq
2682 nt
NT seq
+upstream
nt +downstream
nt
atggctgataagagaaaactacaaggtgaaatagatcgatgtttgaaaaaagttactgaa
ggtgtcgaacagtttgaagacatttggaaaaagcttcacaatgcagccaatgccaaccag
aaggaaaaatatgaggctgatctcaagaaagagattaaaaagctccagcggctacgagac
cagattaagacatgggtggcatccaatgagatcaaagacaaacggcagctagtggagaac
aggaagcttattgaaacgcaaatggagcgatttaaggtggttgaaagagaaaccaagaca
aaggcctactctaaagaggggctgggcttggctcagaaagtagacccagcgcagaaagag
aaggaggaaatggaacagtggctcacgaacacaatagacactttgaacatgcaggtggac
cagtttgaaagtgaagttgagtccctctctgttcaaacacggaaaaagaaaggagacaag
gagaagcaggatcggattgaagaactaaagaggttaatcgaaagacaccggtaccacatt
cgtatgctagagaccatcttgaggatgttggataacgattcgatccaggttgaagcaatc
cataagatcaaagatgatgtggaatattacattgactcttcgcaagacccagattttgaa
gagaatgagttcctctacgatgatctggacttggaggaattaccggcaactttgatggcg
acgtctcctcagggccatattgaagatgagatgttccttcagtccagcagcacaccgacc
tccactacttcctcttctcccatccctccatctcctggcacaggcacaatggagattttg
gaggataagagaggtcgatcgacagacagtgaagtcagtcagtctcctgtgaagaacggc
aacccatctctctcgtccttctcctcatctgcctcctcaggctcctcctcctcctcctct
tcgctggtttctatggctactgtcgtcgttggctgcacagcggtctctgggggcagcagc
ctgctgggaagctttagcagcgcagtgcagcagcatgctcctcagtctcaacagcaagca
caggtcaaactctcctcgacatccgttccctccaacaacacacctagtccacctagtcac
cccacgctacctgcctccactacttcctctctgcctagttccagcacacctggcccagtt
acttccaattcccagtcccaggcttcatctgttcctggggttgagggctctagactgggt
ttgggcctggggaaagggggcgtgacggtgatcagcagcagtagtggggctcagatgcca
ggtctgggcatggccggcatgtctggttctctcaacaccatggcagggcttctctcaggc
tctacccctgccccctacgcccaggcggctgcaggcggaacagcaggtagtgtctccagt
ggtccggtggggagtggcagtgtaagttctggcatatctgtaccgagtgcaggtgcaggg
ggagcaaacacaggcgcgaccagtaatggtacgggtacaggggctggtataggcttgctt
gggtccagtccgggtcacagtaccctaaccggaggaattctaaacctggtaccagggcag
acggctctccaggcgtctgcacagatacctgtaagccatgtgggcaccgcacctggagga
ggaactggagagagcgtattgagtggaaatggaagcagttctgtggcgagtgcaggagtg
ggaacgaacgtagcgcctgcaagacccgctagcggcctcaaacaaaatggagcaaccagt
tacagtgctgtggttgcggacaacacaccagactcctcactcagcagtgccagccaatca
caaatcagccattcctcatcctcgagttcatcaaccagtcaaactctggataatggcccc
agtttattgagctctatcactctacccccctcctccccatcacctgctttcactgacggc
acacctggtggtgggagtctactaaatggcccacactcctacacactcaacacagaagcc
atcaagactcctgaaccaccaagctctttgaaagctatggcagaacgggcggcactggga
ctgacactggatggagagatttcatcactacacctcccagatcgagccccaccgggaccc
acaacggctcctcagcctgctgtttcagaggtcaacctgccgccatctttaggggcgtgt
cctttaggccccacccctctcactaaagagcagctttaccaacaggcaatgcaggaggca
gcatggatacacatgccccacccgtccgattcagagagaatcaggcagtacctgatgaga
aacccgtgtcctacaccgccattccaccaccaggtgcccccacatcattcggactctatt
gagttctaccagagattgtccactgaaacgctcttcttcattttctactacctggagggc
acaaaggcacagtacctgtcggctaaagcactgaagaagcaatcgtggaggttccacacc
aaatacatgatgtggttccaacggcacgaggaacccaagaccatcactgatgagtttgaa
cagggcacgtacatttactttgactatgaaaagtggggccagagaaaaaaggaaggattt
acgttcgagtacagatacctggaggacagagacctgcagtga
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