Sinocyclocheilus rhinocerous: 107717084
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Entry
107717084 CDS
T04916
Symbol
dicer1
Name
(RefSeq) endoribonuclease Dicer
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
srx
Sinocyclocheilus rhinocerous
Brite
KEGG Orthology (KO) [BR:
srx00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
srx03036
]
107717084 (dicer1)
Chromosome and associated proteins [BR:
srx03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
107717084 (dicer1)
microRNA pathway
RISC loading complex
107717084 (dicer1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Dicer_platform
Dicer_dsRBD
Dicer_PBD
Ribonuclease_3
Ribonucleas_3_3
Dicer_dimer
PAZ
ResIII
DEAD
Helicase_C
Cas3-like_C_2
DSRM_2
SLFN-g3_helicase
dsrm
Motif
Other DBs
NCBI-GeneID:
107717084
NCBI-ProteinID:
XP_016379216
LinkDB
All DBs
Position
Unknown
AA seq
1880 aa
AA seq
DB search
MAGLQLVTPASSPMGPFFGLPWQQEAIHDNIYTPRKYQVELLEAALEHNTIVCLNTGSGK
TFIAVLLIKELSHQIRGEDGKRTVFLVNAASSVVQQASTVRTHSDLQVGDYMSEDMTSWP
EEMWNREMMENQVLVMTCHIFFHVLKNGVLPLSKINLLVFDECHLAITDHPYREIMKVCE
GCPGCPRILGLTASILNGKCGPCDLEEKIQNLEKILQSSAETATDLVVLDRYASQPREVV
LDCGLYQDQSGLSERLLNELDEALHFLNDCNLSAHREDRDPTFISKQVLNDCRAVLTVLG
PWCADKAAGIMVRELQKYIKHEQEELNRKFLLFTDTILRKIHALCEEHFSPASLDLKFVT
PKVIKLLEILHEYKPFERQQFESVEWYNNRNQDNYVSWSDSEDEDEDEEAEAKEKPEANF
PSPFTNILCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHSIGKNQPRNKQM
EVEFRKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRAR
APVSNYIMLADSERTKTFEEDLKTYKAIEKILRNKCSKSAECSDFELEPVTDDDNVLPPY
VLRSEDGGPRVTINTAIGHINRYCARLPSDPFTHLAPKCKTVELKTGGYQSTLFLPINSP
LRVPVTGPTMNCARLAEKAVALLCCEKLHKIGELDDHLMPVGKETVKYEEELDLHDEEET
NVPGRPGSTKRRQCYPKAIPECLRGCYPVPEQPCYLYVIGMVLTTPLPDELNFRRRKLYP
PEDTTRCFGILTAKPIPRIPHFPVYTRSGEVTISIELQKSDFTLSAEQLELITRLHQYIF
SHILRLEKPALEFKPVEADSAYCILPLNIVEDSNTLDLDFKFMEDIEKSEARIGIPNTQY
TKKNPFIFKLEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKFPSPEYETFAEYYKT
KYNLDLSNVNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNKQILV
PELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRSQTAIDAGVGAQTLPPDFRYPNL
DFGWKKSIDSKSFISCPSACMEDDDHCKHGTSSDSDHTAQEGCSTEASQPPEGALPCENC
NTPDEKLETHPVLPVTDLQTPNKDKSDCVCSRNLNGTRSDSDNLPHRRDICQCSQLGPLE
SDLSTQTTTSVSVRPSLAGEPQPQPSDECTPGRNSDLCEGHVKKPTSDCCPKPEMATSTT
APSEVSSEVSDVTSTLACTGPAWDSPKTLGPNPGLILQALTLSNASDGFNLERLEMLGDS
FLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVSIFDPPVNWL
PPGYVVNQDKSSTDKWDSDENKDLANGKASDDEDDDDEAEDVEVEPSKEEVNVEDELEYY
YEHIRFIDNMLIGSGAFGKKISLQPAEPGCEWKAPKKAHNSHFSPDGGTDEFDYSSWDAM
CYLDPSKAGEEDDFVVGFWNPSEENCGTDIGKQSISYDLHTEQCIADKSIADCVEALMGC
YLTSCGERAAQLFLCSLGLKVLPAEKQSSGGSAKLQYGWLKIPPRCMFDHPDAERTLNHL
ISGFENFEKKINYTFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYE
DPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEM
QGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLI
EKFSANVPRSPVRELLEMEPETAKFSPAERTYDGKVRVTVEVVGKGKFKGVGRSYRIAKS
AAARRALRSLKANQPQVQNN
NT seq
5643 nt
NT seq
+upstream
nt +downstream
nt
atggctggcctacagctggtgacccctgcctcctcacccatggggcccttcttcggtctc
ccgtggcaacaggaagctatccatgacaacatatacacaccaaggaaatatcaggttgaa
cttcttgaagcagctcttgaacacaatactattgtctgcttaaatactggctcagggaag
acctttatcgcagtactcctaatcaaagagctctcccaccaaatccgtggagaggatggg
aagagaaccgttttcctggtgaatgcagcatcatctgtggttcagcaagcatctactgta
agaacccactctgatctccaggtgggcgactacatgtcagaggacatgacatcatggccc
gaggagatgtggaacagagagatgatggagaatcaggtgctggtcatgacgtgccacatc
ttcttccatgtgttaaaaaatggagtcttgccactatcaaaaatcaacctgctggttttt
gacgaatgccaccttgcaatcacagaccatccttatcgggaaataatgaaggtttgtgag
ggttgcccaggctgtcctcgcattttgggtctgaccgcttccattttaaatggcaaatgt
ggcccttgtgatctggaggagaagattcagaacctggaaaagattctgcagagcagtgca
gaaactgccactgatcttgtggtgctggataggtatgcgtcccagcctcgtgaggtggtg
ctggattgtgggctgtaccaggatcagagtgggctctcggagaggcttttaaatgagctg
gatgaagcccttcattttcttaatgactgcaacttatctgctcatcgagaagatagagat
cccacattcatctccaaacaggtgctgaatgactgccgcgccgtgttgactgtgttgggc
ccttggtgcgccgataaagctgcaggaatcatggtccgggagctgcagaaatatatcaaa
catgaacaggaagagctgaaccgcaagttcctgttgttcacagacaccattctgagaaaa
atccacgccttatgtgaggagcatttctccccagcttccctagacctgaagtttgtcact
cccaaggtcatcaaacttctggagattctccacgagtacaagcctttcgaacggcagcag
tttgagagtgtggagtggtacaataatcgcaatcaggacaattatgtttcttggagcgat
tctgaggacgaagatgaggatgaagaggcggaggcaaaggagaagcccgaagcaaatttt
ccgtcgcctttcaccaacatcctctgtggaatcatctttgtggaaaggcgatatactgca
gttgttttaaacagacttatcaaggaggcagggaagcaggacccagagctggcctacatc
agtagcaacttcatcacaggtcacagcattggcaagaaccagcctcgcaacaaacaaatg
gaggtggagttcagaaaacaagaggaggtcctgaggaagttcagagcccatgaaaccaac
ttgctcattgcaaccagcattgtggaagaaggcgttgatattccaaagtgcaatttggtc
gttcggtttgacctgccgacagagtaccggtcgtacgtgcaatccaaaggtcgcgcccgg
gctccagtctccaattacatcatgctagctgacagcgaacggacaaaaacatttgaggaa
gacctcaagacctacaaggccatagagaagatcctccgaaataagtgctcgaagtcagca
gaatgcagtgattttgaactggagccagtgaccgatgatgacaacgttttaccaccttac
gtcctgcgctcagaggacggcggcccccgtgtcacgattaacacagccattgggcacatc
aacagatattgtgcccgtttgcccagtgatccgttcactcatcttgctccaaagtgtaaa
actgtggagcttaagactggaggttatcagtccacactcttcctacccattaactcacca
ctcagagttcctgtcaccgggccaacaatgaattgtgcaagacttgctgagaaagctgtt
gctcttctctgttgtgaaaagctgcacaaaattggtgaactggatgatcatttgatgcca
gtgggaaaggaaactgtgaagtacgaggaggagctggacctgcatgatgaggaggagacg
aacgtgccaggaagaccaggctccaccaaacggagacagtgttacccaaaagccatacca
gagtgtctgcggggttgttaccctgtgccagaacagccttgctacctttacgtaataggg
atggtcctcaccacccctcttcctgatgagctcaacttccggcggaggaagctgtaccca
ccggaggacactacccgatgttttggcattctgacagctaaaccaatacctcggatccct
cacttccctgtgtatacacgttctggtgaggtgaccatttcgattgagctgcagaagtcg
gactttactctgagcgcggagcagctggagctgatcacacgtttgcaccagtacatcttc
tcccacatcctccgtcttgaaaagccagcactagagtttaagcccgtagaggcagattct
gcctactgcattctacctctcaacattgttgaggattccaatacgttggacctggatttc
aagttcatggaggatattgaaaagtctgaagcacgtattggcattccaaatactcagtac
accaagaaaaacccattcattttcaaattggaggactaccaggatgctgtcatcattcca
aggtatcgtaattttgaccagccacatcggttctatgtggctgacgtttacacagacctc
accccactcagtaaattcccctctccagagtacgagactttcgctgagtactacaaaacc
aagtacaatctggacctgtctaatgttaaccagcccctactggatgtggaccacacatct
tcaagattgaatcttttaactccccggcaccttaatcaaaaggggaaagcccttcctctc
agtagtgcggagaagagaaaggccaagtgggaaagcctacaaaacaaacagattttagtt
ccggagctctgtgccattcaccccatcccagcctctttgtggaggaaagccgtctgcctt
cccagcattctctacagacttcactgccttctgacggccgaagagttgcggtctcagaca
gccattgacgctggtgtaggggctcagaccctgcctcctgatttcaggtatccaaatttg
gatttcggatggaagaaatccatcgatagcaagtctttcatttcctgccccagtgcatgt
atggaagacgacgatcactgtaaacacggcacaagctccgattcagaccacactgcccag
gagggctgcagtacggaggcctcccagcctccagagggcgctctcccctgtgagaactgc
aacacgccagatgaaaagctagaaacccaccctgtgctccctgtgactgatctccagacg
ccgaacaaagacaagagtgactgcgtctgttcccgaaacctcaacggcactcggagcgac
agcgacaaccttccacacagacgtgacatttgccaatgctctcagctgggccctctggag
agtgacctatcaacacaaaccactacctcagtttctgtgaggccctctctagccggcgag
ccacagccccagcccagcgatgaatgtaccccaggcaggaactcagatctctgcgaagga
catgtgaaaaaacctacctcagactgttgccccaaaccagagatggcaaccagcaccaca
gcaccttcagaagtgtcatcagaggtctctgacgtgacatctacattagcctgcacaggt
ccagcctgggattctccgaaaaccttgggccccaaccccggcctcatcttgcaggccctg
accctctccaacgccagtgatggcttcaatctggagaggttggagatgttgggcgactct
ttcctgaaacacgccatcaccacctacctgttctgcacttaccctgacgcccacgagggc
aggctgtcatacatgaggagcaagaaggtcagcaactgtaacctttatcgcctggggaag
aaaaagggccttcccagtcgaatggtggtatccatatttgatcccccagtaaactggctt
ccccccggctatgttgtgaatcaggacaaaagcagcacagacaagtgggactcagatgag
aataaagatttggccaacggaaaagccagtgatgatgaggatgatgacgatgaggcagag
gatgtggaggtcgagccgtctaaagaagaggtcaacgtggaagatgaactggagtactac
tatgagcacatcagattcatcgataacatgctgattggctccggtgccttcgggaagaag
atctccctccagccggccgagcctggctgcgaatggaaagcccccaaaaaagcccacaac
tcccacttttccccagacggcggcactgacgagttcgattacagttcctgggacgccatg
tgctaccttgaccccagcaaagctggcgaggaggatgacttcgtggtgggcttctggaac
ccctctgaggaaaactgtggcacggatattgggaaacagtccatctcctacgaccttcac
actgagcagtgcatcgccgataagagcatagctgattgtgtggaggccctgatggggtgc
tacctcaccagctgtggggagagggcagcccagctgttcctgtgttccctcggcctgaag
gtgctcccggcggagaagcagagttcaggggggtcggccaagctgcagtacggctggctg
aagatccctccgcgctgcatgtttgaccacccggatgctgagcggaccctcaaccacctc
atctctggcttcgagaactttgagaagaagataaactacacgtttaaaaacaaggcatat
cttctgcaggctttcactcacgcctcgtatcattacaacaccatcacagattgttatcag
cggttggagttccttggtgatgcaattttagactacctcataacaaagcacctttatgaa
gatccccggcagcactccccaggtgtgctgaccgacctgcgctctgcacttgtcaacaac
accatatttgcttccctggctgtcaagtacgattaccacaagtacttcaaagctgtctcg
cccgaactgttccatgtgatcgatgattttgtgcaatttcagctagagaagaatgaaatg
caaggaatggattcggagcttcgccgatcagaggaagatgaggagaaggaggaagacatt
gaggtccccaaagcaatgggagacatctttgaatcgctagctggtgcaatttacatggat
agcgggatgtcacttgagacagtttggcaagtgtattatccaatgatgaggccactcata
gaaaaattctccgctaatgtccctcgatccccagtgcgtgaactcctggagatggaacca
gagacggctaagttcagccctgcagagagaacctacgatggaaaagtacgggtgacggtg
gaagtggtgggcaaaggcaagttcaaaggcgtgggacgcagctaccggatagccaagtca
gcggccgcccgccgagccctgcgcagtctcaaagccaatcaacctcaggtccaaaataac
tga
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integrated database retrieval system
