Sinocyclocheilus rhinocerous: 107718279
Help
Entry
107718279 CDS
T04916
Name
(RefSeq) TFIIH basal transcription factor complex helicase XPD subunit-like
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
srx
Sinocyclocheilus rhinocerous
Pathway
srx03022
Basal transcription factors
srx03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
srx00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
107718279
09124 Replication and repair
03420 Nucleotide excision repair
107718279
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
srx03021
]
107718279
03036 Chromosome and associated proteins [BR:
srx03036
]
107718279
03400 DNA repair and recombination proteins [BR:
srx03400
]
107718279
Enzymes [BR:
srx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
107718279
Transcription machinery [BR:
srx03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
107718279
Chromosome and associated proteins [BR:
srx03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
107718279
DNA repair and recombination proteins [BR:
srx03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
107718279
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HBB
DEAD_2
Helicase_C_2
ResIII
DEAD
SesA
Motif
Other DBs
NCBI-GeneID:
107718279
NCBI-ProteinID:
XP_016380772
UniProt:
A0A673L5M1
LinkDB
All DBs
Position
Unknown
AA seq
760 aa
AA seq
DB search
MKLNIDGLLVYFPYEYIYPEQYSYMLELKRTLDAKGHGVLEMPSGTGKTICLLSLIVAYQ
KAYPLEVTKLVYCSRTVPEIEKVVEELRKLMDYYAKQTEAKNDFLALALSSRKNLCIHPE
VSALRFGKEVDGKCHSLTASYIRAQHRSNPSQPVCQFYEEFDAVGRQVPIPPGIYNLNDL
KDFGRRKGWCPYFLARYAILHANIVVYSYHYLLDPKIADLVSKELAKKSVVVFDEAHNID
NVCIDSMSVNITRRTLDRCQTNVETLQNTISRIKETDAAKLQEEYRRLVEGLKEANVARE
TDMYLSNPVLPDDILQEAVPGSIRTAEHFVGFMKRFLEYLKARLRIHHVVQESTPQFLKD
IYEKVCIDRKPLRFCAERLRSLLRTLEIADITDFSAITLISHFATLVSTYSKGFTIIIEP
FEDRTPTIANPVLHFSCMDPSIAIKPVFGRFQSVIITSGTLSPLDIYPRILDFRPVTVAS
FTMTLARTCLCPLIVGRGNDQVAMTSKFETREDFAVIRNYGNLLLEMSAIVPDGIVAFFT
SYIYMENIVASWYEQGILENIQRNKLIFIETQDAAETSMALEKYQEACENGRGAILLSVA
RGKVSEGIDFVHHYGRAVIMFGVPYVYTQSRILKARLEYLRDQFQIRENDFLTFDAMRHA
AQCVGRAIRGKTDYGLMIFADKRYARADKRGKLPRWIQEHLTDGSLNLTIDETVQLGKQF
LRQMAQPFRQEDQLGLSLLTLEQLQSEDMLQKIAQIAQQA
NT seq
2283 nt
NT seq
+upstream
nt +downstream
nt
atgaagctgaatatcgacgggttattagtctactttccgtatgaatacatttatcctgaa
caatactcgtacatgcttgagctgaagaggacgctggatgcaaagggtcatggagttctc
gagatgccctcaggaacaggaaaaacaatttgtcttctttccctcatcgttgcttaccag
aaggcttaccctttagaagtcacaaagcttgtctactgttctcgcactgtgcctgagata
gagaaggttgtggaggaactaaggaaactaatggattattatgcaaagcaaacagaagcg
aaaaatgacttccttgcactggcactttcttcacggaaaaatctgtgcattcatcctgag
gtgagcgccctacggtttggaaaagaagtagatggaaagtgtcacagtctgacagcatct
tatattcgagctcagcatcgcagtaatccaagtcaacctgtctgccagttctatgaggaa
tttgatgcagtaggcagacaggtgcccattccccctggtatatataacttgaatgatctg
aaggattttgggcgtagaaaaggctggtgtccgtacttcttggcacgttatgcaattctt
catgcaaacattgtagtgtacagctaccattacttactagatccaaaaatcgcagacctt
gtctcgaaagagcttgcaaagaaatctgtagttgtgtttgacgaggctcacaacatcgat
aatgtgtgtattgattccatgagcgtcaacattaccaggaggacactggatcgctgccag
actaatgtggaaaccctgcaaaacaccattagcagaattaaggaaacagatgctgccaaa
ctccaagaagaatacaggagattagttgagggtcttaaagaagcaaatgttgccagagaa
actgacatgtatctgtccaacccagttctgccagatgacatcctccaagaggctgtacct
ggcagcatccgcactgcagagcactttgtgggctttatgaagcgctttctcgagtacctg
aaggcacgtttgcggatccatcatgtggtgcaggagagcactcctcagttcctcaaagac
atctatgagaaggtctgcattgaccgcaaacccctgagattttgtgccgagaggctgcgc
tcactgctgaggacgctggagattgcagacattactgacttctcagctattaccctgatc
tcacactttgccacacttgtcagcacctacagcaaaggcttcaccatcatcattgagccc
tttgaagatagaacgccgacaatagcaaatcctgttcttcacttcagttgcatggacccc
tctatcgccataaagccagtgtttgggcgctttcaatcagtcattatcacatcagggacg
ctctctccgctggacatctacccacgcatccttgatttccgcccagtcactgtggcatct
tttaccatgacactggcacgaacctgcctgtgccctcttattgttggccgagggaatgat
caggtagcgatgacctccaagtttgagaccagagaagactttgctgtgatccggaactat
ggaaacctgctgctggaaatgtctgccattgttcctgatggaatcgttgcattcttcaca
agctacatttacatggagaatattgtggcctcatggtacgaacaggggatcctagagaac
atccaaagaaacaagctcattttcatagaaacccaggatgcagctgagaccagcatggcc
ctggagaagtatcaagaggcctgtgagaacggcagaggagcaattctgctttcagtggca
agagggaaagtgtcagagggcattgactttgttcatcattatggtcgtgccgttatcatg
tttggagtgccatatgtttatacccagagccgaatcctcaaggcacggctggaatacctc
agagaccaatttcaaatccgggaaaatgactttctgacgtttgatgcgatgcgccatgcg
gctcagtgtgtgggcagagccattcgaggcaaaacagactacggcctgatgatctttgca
gataagcgttatgcacgagcggataagcgaggaaagctgccccgctggatccaggaacac
cttacagatggaagcctaaatctgaccattgatgagactgtgcagttaggcaagcagttt
ctacgacagatggcccagcccttcagacaggaggatcagttgggtctgtctctgctgacc
ctggaacaactgcagtctgaggacatgcttcagaaaattgctcagatcgctcaacaagcc
tga
DBGET
integrated database retrieval system
