Sinocyclocheilus rhinocerous: 107718956
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Entry
107718956 CDS
T04916
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11-like
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
srx
Sinocyclocheilus rhinocerous
Pathway
srx03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
srx00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
107718956
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
srx03021
]
107718956
03019 Messenger RNA biogenesis [BR:
srx03019
]
107718956
Transcription machinery [BR:
srx03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
107718956
Messenger RNA biogenesis [BR:
srx03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
107718956
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PCF11_charged
Pcf11_helical
CID
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
DUF6980
Ribosomal_60s
Motif
Other DBs
NCBI-GeneID:
107718956
NCBI-ProteinID:
XP_016381694
UniProt:
A0A673KNB1
LinkDB
All DBs
Position
Unknown
AA seq
1460 aa
AA seq
DB search
MSDEGAREDACREYQSSLEDLTFNSKPHINMLTILAEENIQFTKDIVAIIEAQIAKAPAG
EKLPVLYLVDSIVKNVGGEYLEVFAKNLVNSFICVFEKVDEATRKSLFKLRSTWDEIFPL
KKLYALDVRVNSIDPAWPIKPLPPNVNASIHVNPKFLKPTEETSPKPPAPQPPAPSLTQE
QLIRQQLLAKQKQLLELQQKKIELELEQTKAQLAASPAIASNHHVGAPARFDISAKVTRT
VPAPQTKPWLPAPSEKMSTRDPRLNRPGATAVNAKEQVMHKKESQVTPNFPKTSEKRGPV
SAERQIKLEKLRIPKKDNSAIEEKPKSKSVSPSGKCILVRPRGMESEHSKTAELNKKDPR
LHKQMHDRTDSKDDDVREKKRSLEKKDEGVKNLDHQKSSSTRGKLINGSLNKHERLETFL
KQEIKVNKANVRKRSRSRSRSPPLHSPKRKERRSSPKRKNRSITPPPKSGKARISKHQHN
DDAFPQSSLRDERSTKKSAPEPRRPKRPLDDKPAVQKDGPQQRIFPAEHKDTKDSKRWRS
GWEENKHPKQSESDLSHGRLGTQRRKTWSTNQRLSTPRTPKQHRLSVDSNIQIPEALNSA
SKRDLLRKASKRHADGEISSDEFLNVAHQINQLFQYQEERQRSDSWDDSCDEGVYQSKKK
QQGMSDAELSYLEHKSKLKRTQLQRPVQKDGQSPLHEMFYQLQHEMTEQYSESSEVHKMS
DDAIKPDHEDPRRTDRPPSCTGSTFRNSPSPVNLDGTCGKSTGPPFERSSSPVEMDQQSG
DISPCFESPNSVHSGTGPDDGPISVEVLPGHDHFLEQGRSGRNHGESPGNTPTHSSEGSM
AQVNTPRHDGPSIPQRFDRFKSSQAPFDGPSSHMREPRLDGPPRPYAPPPRYEGNTGGFD
GSGGPVRYPGHRFDAPHRFERFPIAHERPVRFNNPAVSHRPMRYTEPHSVVRFDSQTPVR
YDHPMHQNRFVNPPRFDNPHMQHGPPGYEEPRFPARLMNYDEQQGTVRFDSPSGGMRFEN
PVQPEPLRFDAPPVMPRYDPQGPPRYCGPNIPNQLRPQEPTMYDQTQGQAPVVNPAVPPP
TFNIPPMNTYGGPAQQFPMQQNVSQASNFSVAVPTSSDFQGSFRPAPFPGPGVGNVPQPM
MGPQPFMPPNQISFQPGSQFQQPEPEPLRQIDVNDLLSKLISTGIIKPAQTDSTTDSASA
GQTLSVPEEEEEEEQEEDEDVPDLTGFVLEDMKQRHDSIITKLYTGIQCYSCGMRFTASQ
TDVYADHLDWHYRQNRSEKDISKKVTHRRWYYSLTDWIEFEEIADLEERAKSQFFEKVHE
EVVQKTQEAAKEREFQSVKAAADVVHELCEICQEQFEMYWEEEEEEWHLKNAIRVDGKTY
HPSCYEDYKNTSSFVDCTPSPNKMLTENPLIAFMKQEQGDEASCSSIKEEPSEDDMDAPT
VKEEVQVKLEGESQTSAIIF
NT seq
4383 nt
NT seq
+upstream
nt +downstream
nt
atgtcggacgaaggcgcgagggaggacgcctgccgcgagtatcagtcctcgcttgaagat
ctgactttcaacagcaaaccgcacatcaacatgctcaccattctagccgaagaaaacatc
cagttcaccaaggatatcgtcgcaataattgaagcacaaattgccaaggcacctgctggt
gagaagctcccagttttgtacttagtggattccatagtgaagaatgttggaggggaatac
cttgaagtgtttgctaagaacctagtcaattcctttatttgtgtatttgagaaggtggat
gaggccactagaaaaagtctcttcaaattgcgttccacatgggatgaaattttccccttg
aagaaactatatgcactagatgtgcgtgtgaactcaatagatcctgcctggcctataaaa
ccattgccaccaaatgtgaatgcgagcatacatgtcaacccaaaatttttgaaaccgact
gaagaaacatctccgaagcctcctgcaccacaacctccagctccgagcttgacacaagaa
caattgataaggcaacagttgcttgcaaagcaaaagcagttgttagaacttcagcaaaag
aagatagagcttgaacttgaacaaacgaaagctcagttggctgccagtcctgctattgct
tcaaaccaccatgtcggtgctcctgcacgttttgatatctcagcaaaagtcactcgtacg
gttcctgcaccacaaaccaaaccttggcttccagcaccatcagaaaaaatgtcaaccaga
gatcctagattaaacagacctggtgcaacagctgtaaatgcaaaagaacaagtaatgcat
aagaaggagagtcaggtcacaccaaactttccaaaaacatcagaaaaaagaggaccagtc
tcagctgaaagacagattaagttggagaagttgaggattccaaaaaaggataactctgcc
attgaggaaaagcctaaatccaagtcagtgtcaccatctggaaaatgtatccttgtcaga
cccagaggaatggagtctgaacattcaaagactgctgaactgaataagaaggacccaagg
ctacataagcagatgcatgacaggacagattcaaaagatgatgatgtccgagagaagaaa
agaagtttagagaagaaggatgaaggtgtcaaaaacttggatcatcagaagtccagcagc
accaggggcaagcttataaatggctctctaaacaagcatgaaagacttgagacatttctg
aaacaagaaattaaagtgaacaaagcaaatgttagaaaaaggtctcggtcaagatcacgt
tcaccaccgttacattctcccaaaagaaaagagaggcgttcatctccaaagagaaaaaac
aggagtattactccaccccccaagtctggaaaggctaggataagtaaacatcaacataat
gatgatgcttttccacagtcaagtctaagagatgaacgaagtaccaagaaaagcgcccca
gaaccaagacgaccaaaaaggccgcttgacgataaacctgctgttcagaaagatggaccg
cagcagagaatttttcctgcagagcataaagacacaaaagatagcaagagatggaggagt
ggatgggaagaaaataaacatcccaaacagtcagagtcagatctctcacatggacgacta
ggcacccagagacgcaagacttggagcactaatcaaagactgtccacacctcgtacacct
aaacagcatcgcttgagtgttgacagtaacatacaaataccagaagcacttaattctgca
agtaaacgggatcttttaaggaaggctagcaaaagacatgctgatggtgaaatatccagt
gacgaattcctcaatgtagcccatcaaataaaccaactttttcagtatcaagaggaaaga
cagcggtctgactcttgggatgactcgtgtgatgagggagtatatcaatcaaaaaagaaa
caacaaggaatgtctgatgcggagctttcttatcttgagcataaatctaagttgaaaaga
acacagcttcagcgtccagtgcaaaaagatggccagtcgcctttgcatgaaatgttctat
cagcttcaacatgaaatgactgaacaatacagtgaaagctcagaagtgcataaaatgtct
gatgatgccataaagcctgaccatgaagatcctagaagaaccgacaggcctccatcatgt
acaggttccacattcagaaattcaccaagcccagtcaacttggacggaacttgtggaaaa
tccacaggaccgccatttgaacgctcatcatctccagttgaaatggatcaacaatcagga
gacatcagcccatgttttgaaagtcccaacagcgtgcactctggcacaggtccagatgat
ggtcctataagtgtagaggttcttccagggcatgatcatttcttggaacagggaagaagt
ggacgaaaccatggtgaatctcctgggaatacaccgactcactcctcagaaggatctatg
gcacaggtgaacacgccacggcatgatggaccaagtattcctcaaaggtttgatagattt
aagagttctcaagctccctttgatgggccatctagccacatgagagagccaaggttagat
ggtcctccaagaccttatgctcctcctcctcggtatgaaggcaatacagggggatttgat
gggtctggtggacctgtaaggtatcctggacatcgctttgatgcccctcaccggtttgaa
agatttcccatagcccatgaaagacctgtgagatttaacaacccagcagtatcacacagg
ccaatgaggtacacagagcctcatagcgtggtgagatttgactctcagaccccagttcgt
tatgaccacccaatgcaccaaaacagatttgttaatccaccaaggttcgataatcctcac
atgcaacatggtccaccaggatacgaggaaccacggttcccggctagactaatgaattat
gatgaacagcagggtacagttagatttgatagtccatcaggtgggatgcgttttgagaac
ccggtgcagcctgaacccttaagatttgatgcaccgcctgtcatgccaagatatgaccca
caaggtcctccaagatactgcggtccaaatattccaaaccagctcagaccacaggagcca
acaatgtacgatcaaactcaaggtcaagctcctgtggtaaaccctgctgtaccaccacct
actttcaacattccacccatgaacacgtatggtggcccggcccaacagtttcccatgcag
caaaatgtttctcaagcatctaacttcagtgtggcagtccctacgtcatcggatttccag
ggttcatttagacctgctccattccctggtccgggtgttggaaatgttcctcagcctatg
atgggacctcaacccttcatgccaccaaaccaaatatctttccagcctggttcccagttt
cagcagcctgagcccgagccattgaggcaaatagatgtgaacgatctgttatcaaaactt
atatccactggaataataaaacctgcacaaacagactcaacgactgactccgcttcagca
ggtcagactttatctgtgcctgaagaggaagaggaggaggaacaagaggaagatgaagat
gtcccagacttgactggctttgttttggaggacatgaaacagagacacgacagcattatc
accaaactatatactggaatccagtgctattcctgcggcatgcgttttactgcatctcaa
acggatgtgtatgcagatcatttggactggcactacagacagaatcgttcagagaaggat
atcagtaagaaagttacacaccgccggtggtactatagtctgacggattggattgaattt
gaggaaatcgctgatcttgaggagagggcaaagagtcagttctttgaaaaagttcatgaa
gaggttgtacagaaaactcaggaagcagccaaagagagagagttccagagcgtaaaggct
gctgcagacgtcgttcatgagctgtgtgagatttgccaggagcagtttgagatgtactgg
gaggaggaagaggaagagtggcacctgaagaatgccatcagagtcgatggaaagacatat
catccctcatgctacgaagactacaaaaatacatcctcctttgtggattgcacaccctca
cccaataaaatgcttacagaaaaccctttaatagctttcatgaaacaagagcagggtgat
gaggcgtcatgctccagtattaaagaagagccctccgaggacgatatggatgcaccaacg
gtaaaagaggaggttcaggttaagttagaaggagaatcacaaaccagtgcaattattttc
taa
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integrated database retrieval system
