Sinocyclocheilus rhinocerous: 107719412
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Entry
107719412 CDS
T04916
Name
(RefSeq) 5'-3' exoribonuclease 2-like
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
srx
Sinocyclocheilus rhinocerous
Pathway
srx03008
Ribosome biogenesis in eukaryotes
srx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
srx00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
107719412
09123 Folding, sorting and degradation
03018 RNA degradation
107719412
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
srx03021
]
107719412
03019 Messenger RNA biogenesis [BR:
srx03019
]
107719412
03009 Ribosome biogenesis [BR:
srx03009
]
107719412
03016 Transfer RNA biogenesis [BR:
srx03016
]
107719412
Transcription machinery [BR:
srx03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
107719412
Messenger RNA biogenesis [BR:
srx03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
107719412
Ribosome biogenesis [BR:
srx03009
]
Eukaryotic type
Pre-60S particles
RNases
107719412
Transfer RNA biogenesis [BR:
srx03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
107719412
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
Motif
Other DBs
NCBI-GeneID:
107719412
NCBI-ProteinID:
XP_016382310
LinkDB
All DBs
Position
Unknown
AA seq
898 aa
AA seq
DB search
MGVPAFFRWLSRKYPSIIVHCLEEKAKEYNGFKIPVDTSKPNPNEVEFDNLYLDMNGIIH
PCTHPEDKPAPKNEDEMMVAIFEYIDRLFNIVRPRRVLYMAIDGVAPRAKMNQQRSRRFR
ASKEGAELTEEKSKMREEVIQRGGYLPPEEIKERFDSNCITPGTEFMDNLAKCLRYYIAD
RLTNDPGWHNITVFLSDASVPGEGEHKIMDFIRRQRAQPNHDPNTHHCLCGADADLIMLG
LATHEANFTIIREEFKPNKPRPCALCGQMGHEIKDCQGLAREKQGEHDEFADTVPVSEQE
FIFIRLAVLREYLEKELTMASLPFPFDFERSVDDWVFMCFFVGNDFLPHLPSLEIREGAI
DRLVGIYKDVVHKTGGYLTENGFVNLERVELIMQAVGVAEDNIFKKRKDDDESFKRRMKE
KKKRMKAEQGPSFVPGGQFAPQALGGRDRPMAVQNARQTAYEMRMKGNQRNQEAAQSLRA
MMRNGKSSAGGSDDVDSRGVKRKAEDSDSEPEPEDNVRLWEEGWKQRYYKTKFDVDATDD
EFRKKVVQSYVEGLCWVLRYYYQVSHWYTESSIIDFYPDDFAIDLNGKKYAWQGVALLPF
VDERRLRAALADVYPDLSPEEVRRNSLGSDVIFVGKSHPLCDFIRELYRAESHEDTEIPA
ELCHGIQGILNLDEDPILPDKPVESPIPTLRDISSNCAIGIKFKDPQYDDGFVFKAVVLP
GAKIPNKVLKPGDWERSNRGPWRPQLGFNPNRQQAHLDQSAFRKLNHYVDRNQGTGLFGS
GPPFEAQHRGGQYSNAPPPRNYHQGNYRPPQRDHYPQNQYSRPPPVNANAEYPRFQHGAH
GWDRAMQSQSTAYQQNQERGRGGWRPPHNQQDSRGGGHQQGFGQGYGLPPPSQRYNWN
NT seq
2697 nt
NT seq
+upstream
nt +downstream
nt
atgggagtccccgcgtttttccgctggttgagtcggaagtatccgtcaataatagtacac
tgtctggaggagaaggccaaggagtacaatggctttaaaatcccggttgatacaagcaaa
cccaatccaaatgaagtggagtttgacaacctgtatctagacatgaatggaattattcac
ccgtgcacacatccggaggacaagccagcacctaaaaatgaagatgaaatgatggttgcc
attttcgaatatattgaccgtctctttaacattgttcggcctagacgggttctgtacatg
gcaattgatggtgtggctcctcgtgccaaaatgaaccagcagcgctcgagacgattccgg
gcatctaaagaaggagcggagcttacagaggagaaaagcaaaatgagagaagaagttatt
cagagaggtggttacctgccacctgaggaaataaaagaacgttttgacagtaactgtatc
acccctgggaccgagttcatggataatttggccaaatgtttgcgatattacatcgcagac
agactgaccaatgaccctggatggcacaatatcacagttttcttgtcagatgccagtgtt
cccggagaaggagagcataaaattatggatttcatcaggagacagagagctcagccaaat
catgacccaaacacacatcactgtctctgtggagctgatgctgatttgatcatgttgggt
ttggcgacacatgaagccaactttaccattataagagaagagttcaaacccaacaaaccc
agaccctgcgccctgtgtggtcagatgggccacgagatcaaagactgtcagggactggcc
cgagaaaaacagggcgagcatgatgaatttgcagacacagttccagtatcagaacaggag
ttcatattcatccgactggctgtgttacgagagtatctagagaaggagttaacaatggcc
agcctgccattcccatttgacttcgagcggagtgtcgacgactgggtgttcatgtgtttc
tttgtgggaaacgacttcttgccccacttaccgtctcttgagatcagagagggcgccatt
gatcgtctggttggcatctacaaagatgttgtgcataagaccgggggctacttaacagaa
aacggctttgtcaatctcgagcgagtcgagctcattatgcaagccgtaggggtggcagag
gacaacatcttcaaaaagcgcaaagacgatgatgagagttttaaacggagaatgaaggaa
aagaagaaacggatgaaagcggagcagggtccatcgtttgtccctggtggtcagtttgcc
cctcaggctctgggcggcagagacagacccatggcggtgcagaacgccagacaaactgca
tatgaaatgaggatgaagggaaatcagcgcaatcaggaagcagctcagtccttgagagcc
atgatgagaaatggaaagagttctgctggaggcagtgacgatgtggatagtcgtggtgtg
aaacgtaaagcagaggacagtgacagtgaaccggaaccagaagataacgtcaggttatgg
gaagagggctggaaacagcgttactacaaaaccaaatttgatgtggacgcaacggacgat
gagtttcgtaagaaagtggtgcagtcgtacgtggagggcctgtgctgggtgctcaggtac
tactatcaggtaagtcactggtacacagaatcctcaatcattgatttctaccctgatgac
tttgccattgatttgaatgggaagaagtacgcctggcagggtgttgctttgttgccgttt
gtcgacgagcggaggttacgagcagcattagcagacgtctaccctgatttgtccccagag
gaggtaagaaggaacagtctcggaagtgatgtcatatttgtggggaagtcccaccccctt
tgtgatttcatccgggagctctaccgtgcagaatctcatgaggacactgagatccctgca
gaactttgccatggaatccaaggtatattaaatctagatgaagaccctattctaccagat
aaaccagtggagtcgccgatcccaacgctgagagacatcagcagcaactgtgctattgga
atcaaattcaaggatccgcagtatgatgatggttttgtgttcaaggctgttgtcctacca
ggggcgaagatccctaacaaggttctaaaaccaggagattgggagcggagtaaccgcggc
ccatggagacctcaactgggatttaacccaaaccgccaacaagcccatttggaccaatcg
gctttcagaaagctcaatcactatgtggaccgaaatcaagggacgggtctgtttggctct
ggcccgcctttcgaggctcagcataggggcggtcagtacagcaatgccccgccccccaga
aactatcaccaaggaaactaccgtccaccccaaagagaccattaccctcaaaaccaatat
tccagaccacctccagtgaacgccaacgccgagtatcccagattccagcatggagctcac
ggttgggatcgggccatgcagtcccagagcaccgcgtaccagcagaaccaggagagagga
cgaggaggatggagaccccctcacaaccagcaggacagccgcgggggaggacatcagcag
gggtttggacagggttatgggttacctccaccctcacaacgctacaactggaactga
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