Sinocyclocheilus rhinocerous: 107721566
Help
Entry
107721566 CDS
T04916
Name
(RefSeq) collagen alpha-2(IV) chain-like
KO
K06237
collagen type IV alpha
Organism
srx
Sinocyclocheilus rhinocerous
Pathway
srx04382
Cornified envelope formation
srx04510
Focal adhesion
srx04512
ECM-receptor interaction
srx04518
Integrin signaling
srx04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
srx00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
107721566
04518 Integrin signaling
107721566
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
107721566
09142 Cell motility
04820 Cytoskeleton in muscle cells
107721566
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
107721566
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
srx04147
]
107721566
00536 Glycosaminoglycan binding proteins [BR:
srx00536
]
107721566
Exosome [BR:
srx04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
107721566
Glycosaminoglycan binding proteins [BR:
srx00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
107721566
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
107721566
NCBI-ProteinID:
XP_016385139
LinkDB
All DBs
Position
Unknown
AA seq
1759 aa
AA seq
DB search
MEGENHLQHWNTLRCFLLFFAVLILTTEVNAGVKKSGGPCGGRDCSGGCQCYPEKGARGL
PGPLGPQGPTGPNGRPGDPGLQGPKGEKGDRGRGGLMGPKGSVGMEGVPGFNGADGVPGH
PGPSGPRGKPGADGCNGTRGESGTPGIPGLNGEPGISGRPGMKGEKGDPLEMWVYMERFR
GDPGPPGFPGFIGPTGNPGYRGLPGFQGPWGPTGIKGVKGQKGESTKMLKGVKGEMGENG
EPGLPGPYSQTRPVPSEWQGEKGLKGYKGEPGDLGYLSTKGETGVSGFPGQRGNPGLNGF
PGPRGDIGLPGFPGNYGRKGDRGEPGELIGPFEDTGVGPPGPPGERGPIGEYGPKGTKGL
PGPPGPPPSEQQPVDLWGPEGPRGPKGAKGDAGEPGNPATHPGPPGPDGLPGFQGPPGPK
GSLEEFFKGAPGPRGRPGNAGKKGPKGDHGLCECTVKSTPGPAGPPGDAGDIGMAGEWGQ
HGDQGDPGPRGVDGVPYEDVLKTLLKTMCLDTVEEFFKGAPGPRGRPGNAGKKGPKGDHG
LCECTVKSTPGPAGPPGDAGDIGMAGEWGQHGDQGDPGPRGVDGVPGFSGARGLPGPKGR
KGELRAATEKGLPGDPGDPGASGFPGEQGRPGFDGKDGEPGLQGSSGEGPVGEPGGKGYP
GWPGPPGLIGPIGQPGQVLGATKGVRGLTGDEGQVGIDGKQGSPGAPGDCSPQGGDQWNI
LVECIGDPGPPGEIGQPGLPGFSGFPGLQGAKGIQGLSGEPGAKGEKGEPGRGGPPGPRG
FVGPRGDSGYPGSKGVEGTPGLSGTPGLDGAPGEKGEHGEVLGASSGAPGVPGLPGQRGV
IGLPGDPGPQGHPGMEGMPGMIGLKGESGPPGLLGEIGRPGPPGTFGFPGQSGQVGPPGP
SGKTGEPGPSGERGYQGDPGLPGPRGVKGVTGEPGNVGLPGNFGPPGDPGQQGPFGFDGF
PGLKGSRGGQGMMGFTGMPGETGLKGFSGQKGTIGDPGQQGAKGPPGPPGEKGERGLVGR
PGEKPIIHITPHMKEVMKGAKGDHGKMGDHGFTGPRGTKGLPGVPGKEGKDGHPGEPSET
KGTRGLPGVEGLPGPKGMPGLTGLPGIEGFPGLPGPKGGKGSSGAYGRPGESGIKGIKGV
LGPTISLPGSTGLRGETGLPGSLGEKGLTGQSGDRGSPGFNGIEGMKGYPGEPGKVGPPG
SDGLQGFPGTQGHKGWPGVPGQTGTPGIQGQPGQKGFPGLKGIFGLDGLKGQKGINGAPG
SDNWGPPGEPGAKGERGETGIPSTEAGVPGEVGFKGFFGDSGNKGESGHPGVPGPRGPQG
FSDIKGVPGDYGFPGPKGLPGFPGPRGIPGDPSPFGARGENGHPGDFGLTGEKGVQGDSG
EKGPSGEPGVSGRKGENGETGMMGYPGRRGFEGDRGPVGPKGDTGPPGIPGLPGSKGLPP
VPLKLPGERGPPGPMGIQGPQGWRGNPGPAGPPGDPGVLGPNGEKGMPGLTGIPGNPGFR
GEPGQLGHPGLQGEEGTRGSPGLPGTIGMPGRSVNVGYLLVKHSQSEKIPMCPVGMSKLW
DGYSLLYFEGQEKAHNQDLGLAGSCLPRFNTMPFLYCNPGDVCYYANRNDKSYWLSTTAP
IPMMPVEEAEIKPYISRCSVCEAPSVAIAVHSQDITIPQCPAGWRSLWIGYSFLMHTAAG
DEGGGQSLVSPGSCLEDFRTTPFIECNGAKGTCHYFANKQSFWLTSIDQTFQSSPSSETL
KAGQLLSRISRCQVCMKNL
NT seq
5280 nt
NT seq
+upstream
nt +downstream
nt
atggagggtgagaaccatctacagcactggaacacattaaggtgttttctgttgttcttt
gcagtccttatccttacaacagaggtcaacgcaggagtgaagaagagcggtggaccatgt
ggggggagagactgcagcggagggtgtcagtgttatcctgagaagggtgcgaggggattg
cctggacctcttggtccccagggtcccacaggccctaatgggcgaccaggagaccctggt
ctccagggccctaaaggagagaagggagaccgtggcagaggaggccttatgggtccaaaa
ggaagtgtgggaatggaaggtgttccagggtttaatggagcagatggtgttccgggccat
cctgggccgtctgggcctcgtggaaaaccaggagctgacggctgtaatggaacccgggga
gaatcaggaacgccaggcattccaggactcaatggcgaacctggaatatcaggtcggcca
ggaatgaagggggagaagggtgaccctttggagatgtgggtttatatggaaagattcagg
ggagatccaggaccaccaggttttccaggatttattggaccaactggtaacccagggtac
agaggactgccaggatttcaaggtccttggggtcctactggcattaaaggtgttaaagga
caaaagggtgaaagcactaaaatgttaaaaggagtcaaaggagaaatgggggagaatgga
gagccgggccttccaggaccttactcacaaacccgtccagtcccttcagaatggcagggt
gaaaaaggcttgaaaggttataaaggagaaccaggagatttgggatatttatctaccaaa
ggagagactggtgtgtcagggtttccaggacaacggggaaacccaggactaaatggcttt
ccaggacctaggggtgacattggactaccaggtttcccaggaaattatggtcgcaaggga
gatagaggagaacctggagagctgattggtccttttgaagatactggagtgggtcctcca
ggacctccgggagagcgtggcccaattggagagtatggtcctaagggtactaaaggactg
ccgggtcccccaggcccccctccctctgaacaacaaccagtggatttgtggggtccagag
ggaccacgtggaccaaagggagccaaaggtgatgctggagaacctggtaatcctgccact
catcctgggccacctggccccgatgggcttcctggatttcaaggacctcccggacccaag
ggatcattggaagaattcttcaaaggagcaccaggaccacgtggacgtccaggaaatgca
ggaaaaaagggaccaaagggtgaccatggtctgtgcgaatgcactgtaaaatccacacct
ggtcctgcgggtcctcctggtgatgctggggacattggcatggcaggagagtggggtcag
catggtgatcagggagatccgggacccagaggcgtggatggtgtaccttatgaagacgta
ctgaagactttattaaagactatgtgtcttgatacagtggaagaattcttcaaaggagca
ccaggaccacgtggacgtccaggaaatgcaggaaaaaagggaccaaagggtgaccatggt
ctgtgcgaatgcactgtaaaatccacacctggtcctgcgggtcctcctggtgatgctggg
gacattggcatggcaggagagtggggtcagcatggtgatcagggagatccgggacccaga
ggcgtggatggtgtacctggtttctctggtgcaagaggattgcctggacccaaaggcaga
aaaggagagctgagagccgctacagagaaaggactaccgggtgaccctggggacccaggt
gctagtggtttcccaggagagcaaggaaggcctggatttgatggcaaagatggtgaacca
ggtcttcaaggatcttctggagaaggtcctgtaggtgagcctggagggaagggataccca
ggttggccaggtcctccaggtctaataggtccgataggacaacccggtcaagttcttgga
gcaactaaaggtgtaaggggccttactggagatgaaggacaagttggtattgatggaaaa
caagggtcacctggtgctccaggagattgtagcccacaaggaggagatcagtggaatatt
ctagtggaatgtattggagatcccgggccaccaggagagatagggcagcctggacttcca
ggattcagtggatttcctggactgcaaggtgctaaaggcatacaaggtctttctggagaa
cctggggccaaaggagagaaaggtgaaccaggaagaggaggcccacctgggccaagaggt
tttgttggacctcggggcgactcaggttatcctggctccaaaggtgtggaaggaactcca
ggcctttctggtacaccaggtttggatggtgctccaggggaaaagggtgagcatggtgaa
gttttaggagcatcttctggagcccctggagtcccaggactaccaggacagaggggtgtc
attggtcttccaggagacccaggacctcaaggacacccgggtatggagggaatgccaggt
atgataggccttaagggtgaaagtggccctccaggtcttctaggagagataggaagacct
ggaccgccaggaacatttggctttcctgggcagtctggtcaagtaggacctcccggacca
tctggaaaaaccggagaaccaggtccaagtggagaaaggggatatcagggagacccaggc
cttcctgggcccagaggagtaaagggtgtcactggagaaccaggaaatgttggtcttcca
ggcaattttgggcccccaggagatccaggacaacaggggccatttggttttgatggtttt
ccagggttaaagggttccagaggtggtcagggcatgatgggtttcactggaatgccaggt
gagacaggtctgaagggcttttcgggacagaaaggaacaataggtgatccaggacaacaa
ggtgcaaaaggacctcctggccctccaggtgaaaaaggtgagagagggttggtggggcgt
ccaggtgaaaagccaatcatacatataacaccacatatgaaagaggtcatgaagggagct
aaaggtgaccatggaaaaatgggagatcatggcttcactggtcccagaggtacaaaaggt
ctaccaggtgttccaggaaaggagggtaaagatggacatccaggtgagcccagtgaaaca
aaaggtactagaggtcttcccggagtagaaggacttccagggcctaaggggatgccaggg
cttacaggacttcctggaattgagggttttcctggattgcctggacccaaaggtggcaaa
ggctcatctggtgcctatggacggcctggagaatctggaatcaagggaataaaaggtgtc
ttgggtcctaccatcagtcttccaggatcaactggactgagaggtgaaactgggctgcct
ggatctttaggtgaaaagggactcacaggtcagtctggagacagaggaagtcctggtttt
aatggcattgaagggatgaaaggctatccaggagaacctggaaaagttggaccaccaggt
tctgatggcctacaaggtttcccaggaacccagggtcataagggctggcctggcgtgcct
ggacagacaggaacccctggaatccaaggccaaccaggacaaaaaggatttcctggtctt
aaaggcatttttggattggatggcctgaaaggtcaaaagggtatcaatggtgctccaggt
tctgacaactggggtcctcctggtgagccaggagcaaaaggggagagaggagagaccggc
atccccagcacagaagccggtgtccccggagaggtgggattcaagggtttctttggagat
tcaggtaataagggtgaatctgggcatccaggtgtaccgggtcctcggggtccacaagga
ttctccgatataaaaggagtgccaggcgactatggctttccaggcccaaaaggacttcca
ggtttccctggtcccagagggatcccaggtgacccatctccattcggagcaagaggagag
aatggacatccaggtgattttggattgactggagaaaaaggagtccagggcgactcagga
gaaaaaggaccatcaggggaacctggagtgtcaggaagaaaaggggagaatggagaaaca
ggaatgatgggatatccaggaaggcgtggttttgaaggcgacaggggccctgttggacct
aaaggagatactggacccccaggtattcctggcttacctggttctaaagggcttccacca
gtcccactgaaactaccaggggagagaggaccacctggcccaatgggtattcaaggacca
cagggatggcgtggaaacccaggccctgctggacctcctggtgatccaggggttttgggt
ccaaatggggaaaaaggcatgccaggtctcactggaataccaggaaatccaggcttccgt
ggagaacctggacaattgggccaccctggtctacaaggtgaagaagggacccgagggagc
cctggtttacctggtactattggaatgcccggccgcagtgttaatgttggctacctgctg
gtgaagcacagtcagtctgagaagatccccatgtgccctgtgggtatgtccaagttatgg
gatggttacagtctcctgtactttgagggacaggagaaggcccacaaccaagacctgggt
ctagccggctcatgtctcccccgttttaacaccatgcccttcctgtactgcaatcctgga
gatgtatgctactatgccaaccgcaatgacaaatcctattggctgtccaccaccgcacca
attcccatgatgcccgtggaggaggccgaaataaaaccatacatcagccgctgctccgtg
tgcgaagctccatccgtggccatcgccgtacacagtcaagatataacaattccacaatgc
ccagcaggctggagaagtctctggattggctattccttccttatgcacacggcagctgga
gatgaaggtggcggtcagtctctggtgtctccgggctcctgtctagaagatttccgcacc
actcccttcatcgagtgtaacggggccaagggtacgtgtcactacttcgccaacaagcaa
agtttctggttgacgtctatcgatcagaccttccagagttccccttcctctgagacactg
aaagccggtcagctcctgtcacgcatcagccgctgccaagtgtgtatgaagaacctgtga
DBGET
integrated database retrieval system
