Sinocyclocheilus rhinocerous: 107721790
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Entry
107721790 CDS
T04916
Symbol
lig1
Name
(RefSeq) DNA ligase 1 isoform X1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
srx
Sinocyclocheilus rhinocerous
Pathway
srx03030
DNA replication
srx03410
Base excision repair
srx03420
Nucleotide excision repair
srx03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
srx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
107721790 (lig1)
03410 Base excision repair
107721790 (lig1)
03420 Nucleotide excision repair
107721790 (lig1)
03430 Mismatch repair
107721790 (lig1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
srx03032
]
107721790 (lig1)
03400 DNA repair and recombination proteins [BR:
srx03400
]
107721790 (lig1)
Enzymes [BR:
srx01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
107721790 (lig1)
6.5.1.6 DNA ligase (ATP or NAD+)
107721790 (lig1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
107721790 (lig1)
DNA replication proteins [BR:
srx03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
107721790 (lig1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
107721790 (lig1)
DNA repair and recombination proteins [BR:
srx03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
107721790 (lig1)
NER (nucleotide excision repair)
Other NER factors
107721790 (lig1)
MMR (mismatch excision repair)
Other MMR factors
107721790 (lig1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
Motif
Other DBs
NCBI-GeneID:
107721790
NCBI-ProteinID:
XP_016385441
UniProt:
A0A673MUJ2
LinkDB
All DBs
Position
Unknown
AA seq
977 aa
AA seq
DB search
MQRSIASFFQPMKSKEKSDGQVKAKTEPVKSPLKIQNGMQENDSPVKKVHKRSRAIIDSD
DEDQPIVKEQVPKQSEVQTAKPEKAASTVSPKTPITPTTPVTSSTSVAVVTPASSGTPGT
PTSASPSGIPKRKTARKHFPKRKLESRSDGEGTKEEENEVDGAQESKRARVESSPGKTDN
EMMEVEEKRADGKTVVEEQKGEDKAKSTVVEDDANNEMKEKDKSDIKQEKKINGENGKKE
KKEGKKEKEDSSPERVVKKEKNTEEEGGSAKKKPISSFFAPRKAAVKLEKEEQIEGEKKK
NGEISDAAEQKEKKSEKGMDSAVQSQYDPSRAHYNPVDHACWQKGQKVPYLAVARTFEKI
EEDSGRLKNIETLSNFLRSVILFSPDDLLCCVYLCLNQLGPAYQGLELGVGETVLMKAVA
QATGRQLDKIKAEAQEKGDLGLVAESSRSNQRMMFAPANLTAGGVFNKLKEIANMSGNSA
MNKKIDIIKGLFVACRFSEARYIVRSLAGKLRIGLAEQSVLSALSQAVCLSPPGQEFPPA
VLDAGKGMSAENKRVWMEEKALILKQTYCEMPNYDAIIPVLLKEGIDQLPNHCKLTPGVP
LRPMLAHPTKGVGEVMKRFDEASFTCEYKYDGERAQIHILENGEVRIFSRNQEDNTSKYP
DIISRIPQVKKENVRSCVLDSEAVAWDREKKQIQPFQVLTTRKRKDVDASEIKVQVCVYA
FDLLYLNGKSLVREPLSKRKALLRESFEEKEGEFVFARSLDADNTEAIAEFLEQSVRDSC
EGLMVKTLEKHATYEIAKRSHNWLKLKKDYLEAVGDTVDLCVIGAYLGKGKRAGSYGGFL
LACYDEENEEFQSVCKIGTGFKDEDLEQHYNFLKEHILPKPRPYYRVDQSAEPDVWLEAV
QVWEVKCADLSLSPVYKAAMGLVDPEKGISLRFPRYLRIRDDKKPEDATTGSQIADLYKK
QQQIQNQGKKQDLEDYY
NT seq
2934 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgaagcatagcatctttctttcagccaatgaaaagcaaggaaaagagtgatgga
caggtcaaagcaaaaaccgaacctgtaaaaagtcctctcaaaattcagaatggcatgcag
gaaaatgattcacctgtaaagaaggttcataaacgcagtcgagcaatcatagacagtgat
gatgaagatcagccaatagtaaaagagcaggtgccaaaacagagtgaagttcaaacagca
aagccagagaaggctgcttccactgtatctccaaaaactcccataaccccaacgactcct
gtcacgtcgagtacctctgttgccgtggtaacccctgcttcctcaggtactccaggaact
ccgacatcagcatcgccgtcaggcattcccaaacgcaagactgcccgcaagcatttcccc
aagaggaagctggaaagcagaagtgatggagaggggacaaaagaggaggagaatgaggtc
gatggagcgcaggaaagtaagagagcacgagtagagtcttcacctggaaagacagacaac
gagatgatggaggtggaagagaagagagcagatgggaagactgttgtggaggaacagaaa
ggggaggataaagcaaaatcaaccgtagttgaggacgatgcaaacaatgagatgaaagaa
aaggataaaagtgacataaaacaggagaaaaagataaatggagaaaatgggaagaaagaa
aaaaaagaaggcaagaaagagaaggaagatagcagtcctgaacgagtggttaaaaaagaa
aaaaacacagaagaggaagggggatcggccaaaaagaaacctatcagcagcttttttgct
cccagaaaggcagctgtaaaactggaaaaagaggagcaaattgagggagaaaaaaagaag
aatggagagatctctgatgctgctgaacagaaagagaagaaaagtgaaaaggggatggat
tctgcagtccagagccagtatgatccctccagagcacattacaatcccgttgaccacgct
tgctggcagaagggccaaaaagtgccatatttggctgtcgctcgcacctttgagaagatt
gaagaggattcgggcaggctgaagaacattgaaacgctttccaactttctgcgatctgta
attctgttctctcccgatgacctgctatgctgtgtgtacctgtgtctgaatcagctcggc
cctgcatatcagggtctggagctgggtgttggggagaccgtcctgatgaaagccgtcgct
caagcaactgggcgacaactggacaaaatcaaggcggaggctcaggagaaaggtgacctg
ggattggttgctgaaagttcccgtagcaaccagagaatgatgtttgcaccggccaatctg
acagcagggggcgttttcaacaaactgaaagagattgctaacatgagtggaaactctgca
atgaataagaagattgacattattaaaggcctctttgtggcatgtcggttttctgaggct
cgatacattgtcaggtcactggctgggaagctgcggatcggattggctgagcagagcgtt
ctctcggctctcagtcaggctgtgtgtctgtcgcccccgggccaagagttcccaccggct
gtgctggatgcagggaaaggaatgagtgcagaaaacaagagagtgtggatggaagagaaa
gcactgatcctgaaacagacatactgtgagatgccaaattatgatgctatcattcctgta
ttgctgaaggagggcatagatcaactgcccaatcactgcaagctcaccccaggtgttccc
ctgcggcccatgttggctcacccgactaaaggggtcggtgaggtaatgaaacgttttgat
gaggcatctttcacctgcgagtataaatacgatggagagagagcccagatccatattctt
gagaatggagaggtgcgcatttttagccgaaaccaagaggacaacacaagcaaataccct
gatattatttcacgaatcccacaggtgaagaaagagaacgtacggtcctgtgttctggat
tcagaggcggtggcctgggacagagaaaagaaacagatccagccgtttcaggtcctcacc
acgaggaagaggaaggatgtggatgcatctgagatcaaggttcaggtgtgtgtgtacgcc
tttgatctgctgtacctcaacggaaagtctctggtgcgagagcctctaagcaaacgcaag
gctctgttacgggagagttttgaggaaaaagaaggggagtttgtttttgctcgatctctg
gacgctgacaacacggaggccatcgctgagtttctggagcagtctgtacgagattcttgt
gagggcctaatggtgaagacattggaaaagcatgcaacttatgagattgccaagcgctcc
cacaactggctcaagctgaagaaggactatctggaggctgttggagacacagtggatctg
tgcgtgattggtgcttatctggggaaggggaagagagcaggcagctatggaggatttcta
ctggcctgctacgatgaggagaacgaggagttccagtctgtctgcaagattggaacaggc
ttcaaagatgaagatctggagcaacattacaattttttaaaggagcacatcttgcctaaa
ccacgcccatattaccgtgtggaccaatcggcagagccggatgtctggctggaggcggta
caagtgtgggaggtgaaatgcgctgacctttcactgtctccagtctacaaggcagcaatg
ggattggtggacccagagaaaggcatttcactccgtttcccacggtacctcaggattaga
gatgacaaaaaaccagaggatgccaccacagggtcacagattgcagatctctacaagaag
cagcagcagattcaaaaccagggcaaaaaacaagatctggaagactactattga
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