Sinocyclocheilus rhinocerous: 107722140
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Entry
107722140 CDS
T04916
Name
(RefSeq) collagen alpha-2(I) chain-like
KO
K06236
collagen type I alpha
Organism
srx
Sinocyclocheilus rhinocerous
Pathway
srx04510
Focal adhesion
srx04512
ECM-receptor interaction
srx04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
srx00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
107722140
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
107722140
09142 Cell motility
04820 Cytoskeleton in muscle cells
107722140
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
srx00536
]
107722140
Glycosaminoglycan binding proteins [BR:
srx00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
107722140
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Motif
Other DBs
NCBI-GeneID:
107722140
NCBI-ProteinID:
XP_016385859
LinkDB
All DBs
Position
Unknown
AA seq
1352 aa
AA seq
DB search
MLSFVDTRILLLLAVTSYLASCQSGPRGPKGPRGERGPKGPDGKPGRPGLPGPPGPPGPP
GLGGNFAAQYDGAKGLDPGPGPMGLIGPRGPSGPPGAPGPQGFQGHAGEPGEPGQAGAVG
SRGPPGPSGKNGEDGNNGRPGKPGDRGTPGAQGARGFPGTPGLPGMKGHRGYTGLDGRKG
EPGAAGLKGENGAAGSNGTPGQRGGRGLPGERGRVGPSGPAGARGADGNTGPAGPAGPLG
AAGPPGFPGAPGPKGEIGTAGPTGPSGPQGQRGEPGQNGAVGPVGPPGNPGANGINGAKG
AAGTPGVAGAPGFPGPRGGPGPQGPSGASGPRGLAGDPGPVGVKGDAGVKGEPGSAGPQG
PSGPSGEEGKRGSTGEQGSTGPAGLRGPRGAAGTRGLPGLAGRSGPMGMPGARGATGSPG
ARGPPGDAGRAGEPGLVGARGLPGSPGSSGPPGKEGPSGLAGQDGRTGPPGPTGPRGQPG
NIGFPGPKGPSGESGKPGEKGPTGPSGLRGLPGPDGNNGPSGPVGLAGAPGEKGEQGASG
APGFQGLPGPAGPVGEAGKPGDRGIPGDQGVSGPAGVKGERGNPGPAGAAGAQGPIGARG
PAGTPGPDGNKGEPGAVGVAGAPGHQGAGGMPGERGGAGTPGPKGEKGELGYRGLEGNVG
RDGARGAPGPSGPPGPAGANGDKGETGSFGPAGPAGPRGAPGERGESGPAGPSGFAGPPG
ADGQTGPRGEKGPAGGKGDVGPHGPAGPAGNTGPLGPTGPAGPPGARGDSGPSGLTGFPG
AAGRVGPPGPAGIVGPAGPTGAPGKDGPRGSRGDVGPAGPPGENGLIGPPGLAGEKGSSG
EAGTPGAPGPAGPQGQLGSLGFNGLPGSRGDRGLPGGPGAVGESGRVGPAGAPGPRGPLG
NIGMPGMTGPQGEAGREGSSGNDGPPGRPGASGLKGDRGEPGSPGPAGSVGAPGPNGPSG
AAGRPGNRGESGPSGSAGPVGSAGARGAPGPSGPRGEKGVAGDKGERGMKGLRGHPGLQG
MPGTNGPSGDSGPAGVAGPAGPRGPAGPNGPPGKDGSNGMPGAIGPSGHRGPPGHVGPSG
PPGSPGLPGPPGAAGGGYDTSGGYDEYRADQASLRAKDYEVDATIKSLNTQIENLLSPEG
SKKNPARTCRDIRLSHPEWSSGFYWIDPNQGCTVDAIKAYCDFSTGQTCIHPHPESIPRK
NWYRSSQEKKHIWFGETINGGTEFGYNDETLSPQSMATQLAFMRLLANQAVQNITYHCKN
SIAYMDAENGNLKKAVLLQGSNDVELRAEGNSRFTFSVLEDGCSRHTGQWSKTVIEYRTN
KPSRLPILDIAPLDIGGADQEFGLDIGPVCFK
NT seq
4059 nt
NT seq
+upstream
nt +downstream
nt
atgctcagctttgtggatacccggattctgttgctgcttgcagtgacttcgtacctagca
tcatgtcaatcgggccccaggggaccaaaaggacccagaggtgagaggggtcctaaagga
ccagatggaaaacccggcagacctggacttcctgggcctcccggcccccctggcccccct
ggtcttggtggaaactttgctgctcaatatgatggcgctaaaggacttgaccctggccct
ggccctatgggtttgataggacctagaggcccatctggacctcccggtgcccctggacct
caaggattccaaggacatgctggtgagcctggagagcccggacaggctggagctgttggt
tctcgtggacctcctggaccttctggcaaaaatggtgaagatggtaacaatggcagacct
ggaaaacctggagacagaggaacccctggagcacagggtgcccgtggtttccccggaact
cctggacttcctggcatgaagggacacagaggttacaccggtcttgatggacgcaaagga
gagcctggtgccgctggtcttaagggtgagaatggtgctgctggatcaaatggaaccccc
ggacagagaggtggtcgtggtcttcctggtgagagaggtcgtgttggcccttctggccca
gctggtgctcgcggtgctgatggcaacactggtcctgctggccctgctggtcctttggga
gcagctggtcctcccggtttccctggtgcccctggacctaagggagaaattggaaccgct
ggccccactggcccatctggacctcagggacaaagaggagagccaggccagaacggtgct
gtgggcccagtcggaccccctggtaaccctggtgctaatggtatcaacggtgctaaggga
gcagctggcacccctggtgttgctggtgcccctggtttccctggccctagaggcggccct
ggcccccagggaccttctggagcctctggtccaagaggtcttgctggtgaccctggaccc
gttggagtgaagggagatgctggtgtcaagggtgagcctggtagtgctggtcctcaggga
cccagtggtccttctggtgaagagggcaagagaggctcaactggtgagcagggatcaact
ggacccgctggactgcgtggacctagaggagctgctggtactcgtggtctgcctggtctg
gctggcagatcgggcccaatgggcatgcctggtgcccgtggtgctactggttcccctgga
gcccgtggacctcctggagatgccggtcgtgctggtgagcctggtcttgttggagctaga
ggtctccctggtagccccggcagttctggaccccctggaaaggaagggccttctggtctt
gctggtcaagatggccgcactggcccccctggcccaactggacccagaggccagcccggt
aatattggattccccggtccaaagggaccttctggcgagtctggcaagcctggtgagaag
ggacctactggccccagtggactgagaggtcttcctggtccagatggtaacaatggccct
tctggtcccgtcggacttgctggtgctccaggtgagaagggagagcagggagcgtctggt
gctcctggtttccagggtcttcctggccccgctggacctgttggtgaggccggcaagccc
ggagatagaggtatccctggagatcaaggtgtatcaggacctgctggtgtgaagggagag
cgtggtaaccctggacccgctggtgctgctggcgctcagggacccattggtgctcgtgga
cctgctggtactcctggccctgatggaaacaagggagagcctggtgcagttggagttgct
ggtgcccctggacaccagggagctggtggtatgcccggtgagcgtggtggcgctggaact
cctggacctaaaggagagaagggtgagcttggatacagaggcctggagggcaatgttgga
agagatggtgcccgtggtgctcctggacccagtggaccccctggacccgctggtgctaat
ggtgacaagggtgagactggctctttcggccctgctggacctgctggtcctcgtggtgct
cctggcgaacgtggtgagtctggccctgctggaccttctggatttgctggaccccctggt
gctgatggccagactggaccaagaggtgagaaaggacctgctggtggaaagggtgatgtt
ggaccccacggccctgctggtcctgctggcaatactggacccctcggtcctactggtcct
gctggcccacctggtgcccgtggtgactccggtccatctggtctgactggtttccctggt
gctgctggcagagttggacctcctggtcctgctggtattgttggacctgctggtcccact
ggtgctcctggaaaggatggcccacgtggttctcgtggtgatgttggccctgctggtccc
ccaggagagaatggactgattggaccacctggtctggctggagagaagggatcttctgga
gaggctggcacacctggagcacctggacctgctgggcctcagggtcagctgggatctctg
ggattcaatggtcttcctggctccagaggtgaccgtggtcttcctggtggccccggtgct
gttggtgagtctggaagagttggccctgctggtgcccctggtccccgtgggccccttggc
aacattggcatgcctggtatgactggtcctcagggagaggctggacgtgagggaagctct
ggtaatgatggacctcctggccgtcctggtgcttctggccttaagggagaccgtggtgag
cctggttcccctggacccgctggatctgtcggtgctcctggacccaatggaccatcaggc
gctgctggcagacccggaaaccgtggtgaatctggaccttctggatctgctggccctgtt
ggatctgctggagcaagaggtgcacctggcccttctggacctcgtggtgagaaaggtgtt
gctggagacaaaggagaaaggggcatgaagggacttcgtggacatcctggtctgcaggga
atgcctggaaccaatggtccttctggtgacagcggccctgctggtgtggctggtcctgct
ggtccaagaggcccagctggtcctaatggcccccctggtaaggacggctcaaatggcatg
cctggtgctattggaccctctggacaccgtggtcctcctgggcatgttggaccttctggt
cctcctggatctcctggtcttcccggaccccctggtgcagctggtggtggatatgacaca
tctggaggctatgatgagtacagagctgaccaggcctctctcagggctaaggattatgag
gtggatgccaccatcaagtccttgaacactcagattgagaatctgctttcccctgagggc
tcaaagaagaaccctgcccgtacttgccgtgacatcaggctcagccaccctgaatggagc
agtggattctactggatcgaccccaaccagggctgcaccgtggatgccatcaaggcctac
tgcgacttctctactggccagacctgcatccacccccacccagagagcattccacgcaaa
aactggtacagaagctcccaggagaagaaacacatttggttcggcgagaccatcaatggt
ggtactgagttcggttacaatgatgagaccctgagcccacagtccatggctactcagctg
gccttcatgcgtttgctggccaaccaggcagtccagaacatcacctatcactgcaagaac
agcatcgcctacatggatgccgagaatggaaacctgaagaaggctgtgttgctgcagggc
tccaatgatgtggagctcagggcggagggcaacagccgcttcactttcagcgtcctagaa
gatggctgcagtagacacactggccagtggagcaagacagtcattgaatacagaacaaat
aaaccatctcgccttcccatcctcgacattgcacctttggacattggtggcgcagatcaa
gagtttggtttggacattggcccagtctgtttcaaataa
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