Sinocyclocheilus rhinocerous: 107723079
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Entry
107723079 CDS
T04916
Name
(RefSeq) CCR4-NOT transcription complex subunit 10-like isoform X1
KO
K12607
CCR4-NOT transcription complex subunit 10
Organism
srx
Sinocyclocheilus rhinocerous
Pathway
srx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
srx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107723079
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
srx03019
]
107723079
Messenger RNA biogenesis [BR:
srx03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
107723079
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_14
TPR_12
ARM_TT21_N
TPR_8
ANAPC3
TPR_7
TPR_10
ARM_TT21
TetR_C_5
TPR_MalT
SCAF11-like_C
Motif
Other DBs
NCBI-GeneID:
107723079
NCBI-ProteinID:
XP_016387072
LinkDB
All DBs
Position
Unknown
AA seq
749 aa
AA seq
DB search
MAETGSDQAGDMKHDSISSPGISDQEKETASNAFEAFKAGSYDESLKHLDSLQELNKEDY
KITMNKAITEFYKSGQTTTSTLKQTLMTLKNQMHTAVDDIDGLDDVENSILYYNQAVIHY
HMRQYSEAISIGEKLYQFLEPFEEKFAQAVCFLLVDLYLLTFQPEKALHLLAVLEKLTVK
DGNSKNGKGESTNRTNKESTAMKAEFTAMVEAAKSKMHQYKVRAYIQMKSLKACKREIKS
VMNTSGNSAPSLFLKSNFEYLRGNYRKAVKLLNSSNIAEHPGPLKTGECVRCMFWNNLGC
IHFAMGKHNLGLFYFKKALQENDHICAQLGDGSNGQAAKKFTGIPMCALLANKRYELLYN
CGIQLLHIGRPLAAFECLMEAVQVYHSNPRLWLRLAECCITANKGSSEQETKGLPSKKGI
VQAVVGQGYHRKIVLASQSTQNTIYSEGQSAAIPVASMEFAAICLRNALLLLSEHQQHDS
KPDNGSKSCSQSGSTESSSETSDACSGKTQEGDKFIPAAPSSPLIKQEVENLRCSILACS
AYVALALGDNLMALNHAEKLLHQTKLSGSLKFLGHLYAAEALISLDRISDAIAHLNPENV
TDVSLGVSSSEQDQGSDKGDLEPAESSGKQTPLCYPSSVSSARATMLFNLGSAYCLRSEY
EKARKCLHQAASVVNTKEIPPEAILLGVYLELQNGNTQLALQIIKRNQLLPSVKPASSPD
LRKKPLPFQSSQPVQPIQTPSSFTQVQRK
NT seq
2250 nt
NT seq
+upstream
nt +downstream
nt
atggctgaaaccggttcagatcaagctggtgacatgaaacatgacagcatttcctcccct
gggatctcagatcaggagaaggagacggcatccaatgcttttgaggcgtttaaggctgga
agctatgacgagtccctgaaacaccttgacagccttcaggagcttaacaaagaggactac
aagattacaatgaataaagcgatcactgagttttataaaagtgggcagacaacaaccagc
accctgaagcagacattaatgaccttgaagaatcagatgcacacagctgtggatgatatt
gacggtttggatgatgttgagaacagtatcctctattacaatcaagcggtgattcattac
cacatgcgacagtattcagaagctatatccatcggggagaagctctaccagtttcttgaa
ccttttgaagaaaagtttgctcaggccgtttgtttcttgttggtggatctatacctgctc
accttccagccagagaaggcactgcacctgttggctgtgctggagaagctcactgtgaag
gatgggaacagcaaaaatggcaaaggagagagcaccaacaggacaaacaaggaatctact
gctatgaaagcagagttcacagctatggtcgaggcagctaaatcaaagatgcaccagtat
aaagtacgagcctatatccagatgaagtcactgaaggcctgtaaacgggaaatcaaatct
gtgatgaacacatctggaaattctgcaccctcactcttcctgaagagtaattttgagtat
ttgaggggaaattatcgtaaagctgtgaaactcctcaacagttcaaatatcgcagagcat
ccaggacccttgaaaacaggtgaatgcgtgagatgtatgttctggaataatctcggttgt
atccattttgccatggggaagcacaacctgggtcttttttactttaaaaaagcacttcaa
gaaaatgaccacatatgcgcccagcttggtgatggcagtaatgggcaagcagctaagaag
ttcacaggcatccccatgtgtgctctgttagctaataagcgctatgagctgctgtataac
tgtgggattcagttacttcatatcggtcgaccgctggcagcgtttgagtgtctgatggag
gcggtgcaggtgtatcactccaaccctcgactctggctcaggctcgcagaatgctgcatc
acagctaataaagggagctcggagcaggaaacaaaaggtttgcccagtaaaaaggggatt
gtgcaggctgttgttgggcagggctatcatcgcaagattgttttagcatcacagtccaca
caaaacaccatttacagtgagggccagtcagcagcaatcccagtggccagtatggagttt
gcagcgatctgtctgcgtaacgctttgctcctgctctcagagcaccaacagcacgacagc
aaacctgacaatggctcgaagagctgcagtcagtcaggcagcacagaaagcagcagcgag
accagcgatgcctgcagtgggaagactcaagagggagacaagttcatacctgctgccccc
tcatcacccttgataaagcaagaggtggagaatctcaggtgctcaattctagcctgcagt
gcatatgtggctcttgctcttggggacaacttaatggctcttaaccatgcagaaaagctc
ctgcatcagacaaagctgtcaggatcgctcaagttcctgggtcacctatatgcagctgaa
gccctgatctctctggacagaatttctgatgccattgcacatctcaacccggagaacgtt
actgacgtctcgttaggtgtctcatccagcgaacaagaccaaggttctgataaaggagat
ctggagcctgcggagtcctcagggaagcagacgcctttgtgttaccccagctcagtaagt
tctgcccgggccacaatgctcttcaatctgggcagtgcgtattgcttgaggagcgagtac
gagaaagcccgcaagtgcctccatcaggctgcttcagtggtgaacactaaggagattcct
ccagaagccattttactgggcgtctacttagaactgcagaatggaaacacacagctggcg
ctacagatcatcaaacggaaccagctcctcccgtctgtcaagcccgcctcctcccctgac
ctccgtaagaaaccacttcccttccagtcatcccagcctgtacagcccatacagaccccc
tcctcctttacacaagtacagcgcaagtga
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