Sinocyclocheilus rhinocerous: 107724892
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Entry
107724892 CDS
T04916
Symbol
snrnp200
Name
(RefSeq) U5 small nuclear ribonucleoprotein 200 kDa helicase
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
srx
Sinocyclocheilus rhinocerous
Pathway
srx03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
srx00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107724892 (snrnp200)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
srx03041
]
107724892 (snrnp200)
Enzymes [BR:
srx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
107724892 (snrnp200)
Spliceosome [BR:
srx03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
107724892 (snrnp200)
Complex C
U5 SnRNP specific factors
107724892 (snrnp200)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sec63
SNRNP200_wHTH
DEAD
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
AAA_30
PhoH
SWI2_SNF2
Sigma54_activ_2
Motif
Other DBs
NCBI-GeneID:
107724892
NCBI-ProteinID:
XP_016389469
UniProt:
A0A673G441
LinkDB
All DBs
Position
Unknown
AA seq
2134 aa
AA seq
DB search
MADVTARSLQYEYKANSNLVLQADRSLIDRTRRDEPTGEVLSLVGKLEGTKMGDRSQRTK
PQMLEERRAKRRKRDEDRHDINKMKGFTLLSEGIDEMVGIVYKPKTKETRETYEILLSFI
QAALGDQPRDILCGAADEVLAVLKNDKMRDKERRREVEQLLGPADDTRYHVLVNLGKKIS
DYGGDKELQNMDDNIDETYGVNVQFESDEEEGDEDQYGEVRDEGSDDSEGEEADESSTLT
ANLGNTGDVMMTKKKDLHPRDIDAFWLQRQLSRFYNDAIVSQKKADEVLEILKTASDDRE
CENQLVLLLGFNTFDFIKVLRQHRRMILYCTMLASAQSEAEKEKIMNKMEADQDLSKVLY
QLQETEKEDIIREERSRRERVRKSRVDDLESMDIDHGEAVTSRQLLDLEDLAFSQGSHFM
ANKRCQLPDGSFRKQRKGYEEVHVPALKPKTFGDDETLVAIEKLPKYAQAGFEGLKTLNR
IQSKLFKTTLETDENLLVCAPTGAGKTNVALMAMLREIGKHINMDGTINVDDFKIIYIAP
MRSLVQEMVGSFGKRLASYGITVSELTGDHQLCKEEINATQIIVCTPEKWDIITRKGGER
TYTQLVRLIIIDEIHLLHDDRGPVLESLIARTIRNVELTQEDVRLIGLSATLPNYEDVAT
CLRVDPSKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQVLV
FVHSRKETGKTARVIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFA
IHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTE
LGALDILQMLGRAGRPQYDSKGEGILITSHGELQYYLSLLNQQLPIESQMVAKLPDMLNA
EIVLGNVQNAKDAVNWLGYTYLYVRLLRNPTLYGVSHDDRSSDPLLEQRRMDLVHTAATV
LEKNNLVKYDKRSGCFQVTDLGRIASHFYITHESIMTYNQLLKPTLSEIELFRVFSLSSE
FRNITVREEEKLELQKLLERVPIPVKESIEEPSAKINVLLQAYISQLKLEGFALMADMVY
VTQSAGRLMRAIFEIVLSRGWAQLTDKTLNLCKMIDKRMWQSMSPLRQFRKLPEEVIKKI
EKKNFPFERLYDLNHNEIGELIRMPKMGKTIHKYVHQFPKLDLAVHLQPITRSTLKVELT
ITPDFQWDDKIHCSSEAFWILVEDVDSEVVLHHEFFLLKAKYAQDEHLVTFFVPVFEPLP
PQYFIRIASDRWLSCETQLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNAAFENLYQN
FPFFNPIQTQVFNAVYNSDDNVFVGAPTGSGKTICAEFAILRMLLHNSEGRCVYITPMEA
LAEQVFIDWYQKFQETLNKKVVLLTGETSTDLKLLGKGDIIVSTPDKWDILSRRWKQRKN
VQNVSLFIVDEIHLIGGDNGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDVAHWL
GCSTTATFNFHPNVRPVPLELHIQGFNVSHTQTRLLSMAKPVYHAIMKHSPSKPVLVFVP
SRRQTRLTAIDILTFCAADVVPQRFLHSTEKDLAPFMEKLSDVTLKETLSNGVGYLHEGL
SPTERRIVEHLFTSGAIQVMVASRSLCWGTNISAHLVIVMDTQYYNGKIHAYVDYPIYDV
LQMVGKANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCLHDHFNAEIVTKT
VENKQDAVDYMTWTFLYRRMTQNPNYYNLQGMSHRHLSDHLSELVENTLQDLEQSKCISI
EDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEIISNAAEYKNIPIRHHE
DTLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLSAELQSDTEEILSKAVRLIQ
ACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPHFTSEHIKRCTDKGVESIFD
IMEMEDEDRTGLLQLTDVHMADVARFCNRYPNIELSYEVADKDSIKSGNPVLVQVQLERE
EEVTGPVIAPLFPQKREEGWWVVIGDPKSNSLISIKRLTLQQKAKVKLDFVAPVVGVHNY
TLYFMSDSYMGCDQEYKFSMDVKEADSEGESDSD
NT seq
6405 nt
NT seq
+upstream
nt +downstream
nt
atggcggatgttactgcacgtagtttgcagtatgaatacaaagcgaactccaacttggtg
ttgcaagcggacagatctctgatcgaccgcacccgcagagatgagcccaccggagaggtg
ctgtctctggtcggcaaactggagggaactaaaatgggagacaggagtcagagaaccaaa
cctcagatgctggaagagaggagagcaaagagaagaaagagagacgaagacagacatgac
ataaacaagatgaagggcttcacactgctgtctgaggggattgatgagatggtgggcatc
gtatacaagcccaagaccaaagagacaagagaaacatatgaaattctcctcagcttcatt
caggcagccctaggagatcagccaagggatatcctttgtggagctgcagacgaggtgttg
gctgtgctgaaaaatgacaagatgagagacaaagagaggaggagggaggtggagcagttg
ctggggcctgcggacgacacacgctaccacgtcctagtcaacctgggcaagaagatctct
gactatggtggagacaaagagcttcaaaatatggatgataacattgatgaaacctatgga
gtcaatgttcagtttgagtctgatgaagaggagggcgacgaggaccagtacggagaggtt
cgggatgaaggctctgatgacagcgagggagaggaggcagatgaaagcagcaccctgact
gctaatctgggcaacacaggcgatgtaatgatgaccaaaaagaaggatcttcacccccga
gacattgatgccttctggcttcagcgacagctcagccgcttctacaatgatgccatcgtg
tctcagaagaaagcagatgaggtcttggaaatccttaagactgccagtgatgaccgagag
tgtgagaaccagttggtgctgcttttgggcttcaacacatttgacttcattaaggtcctc
cgccagcacaggcgaatgatcctgtactgcaccatgttggccagtgcccaaagtgaggct
gagaaggagaaaatcatgaataaaatggaagctgatcaggatctttccaaagttctttac
cagctgcaggagactgagaaagaggacatcatcagggaggagcgatctcgccgggagaga
gtaagaaagtctcgtgtggatgatctggagtctatggacattgatcatggagaggctgtg
acctcgaggcaactactagatctggaagacctggccttctctcagggcagtcacttcatg
gccaacaagcgttgtcagctgcctgacggctccttccgcaaacagaggaagggttacgag
gaggtccatgtgcccgctctcaaacccaaaacctttggtgatgatgagacattggtggct
attgagaagctgcccaaatatgcccaagctggattcgaaggattgaaaaccttgaatcgc
atacagagtaaactcttcaaaaccacattggagacagatgaaaacctgctggtttgcgct
ccaacgggtgctggcaaaacgaatgttgctctcatggcaatgctcagagagattggaaag
catatcaacatggatggcaccatcaatgttgatgattttaaaatcatctacatcgctccc
atgcgctcactagtacaggagatggtgggcagctttggcaagcgcttggctagttatggc
atcactgtttctgagctgactggagaccatcagctgtgtaaagaggaaataaacgccacc
caaattatcgtgtgcaccccagagaaatgggacatcatcacccggaaaggaggagaacgc
acatatacgcagcttgtgcgccttatcattattgatgagatccacttgctgcatgatgac
cgtggcccagttctggagtccttgattgctcgaaccatccgcaatgtggagctgacacag
gaagacgtgaggctcatcggcctcagtgccacactgcccaactatgaggatgtggcaacc
tgccttcgtgtggatccatccaagggactcttctattttgacaacagtttccggcccgtg
cctctggagcaaacttatgtaggaattacagagaagaaggctatcaagcgcttccagatt
atgaatgagattgtctatgagaagatcatggaacatgctggaaagaatcaggtgttggtg
tttgtgcactcgagaaaggagaccggaaagacggcacgtgtgatcagggacatgtgtttg
gagaaggacacactggggttgttcctgagagagggttcggcctccactgaggtcctgagg
actgaagccgagcagtgcaagaacctggagctgaaggatctattgccatatggttttgct
attcaccatgctggaatgaccagagtggacagaacgttggtagaggatctgtttgctgac
cgtcacattcaggtattggtgtctacagccactctggcctggggtgtgaacttgccagcg
cacactgtcatcatcaaaggcacacaggtgtacagtccagagaaaggcagatggacagag
ctgggagccttggatatcctacagatgctgggtcgtgctggcaggccacagtatgactct
aagggagaaggtattctgatcacttcccatggagagctgcagtattacctgtccctgctc
aatcagcagctgcccatcgagagccagatggtggccaaactacccgacatgctcaatgct
gagatagtgttgggcaatgtgcagaatgccaaggatgctgtaaattggctgggttacaca
tacctttatgttcggttgttgcggaaccccactctatatggcgtctcccatgacgaccgc
agcagtgaccccctgctagagcaacgaaggatggacctagtgcacacagcagccaccgtc
ttggagaagaacaacttggtcaaatatgacaagagatctggctgctttcaggtgacagac
ctgggccgcattgccagtcatttctacatcacccacgagtccataatgacatacaaccag
ctgctgaagcctacactgagtgagatcgagctcttcagggtgttctcgctctcctctgag
ttcagaaacatcaccgtcagagaggaagaaaaactggagcttcagaaactgcttgagaga
gtccctattccagtgaaggaaagcattgaagaacccagtgcaaagattaatgtgctgctg
caggcatatatctctcagctcaaactggagggctttgctctcatggctgacatggtctat
gtgacgcagagtgctggcagactgatgagggccatctttgagattgtcctgagcagaggc
tgggcccaactcaccgacaagactttgaacctttgtaagatgatcgacaaaaggatgtgg
cagtcgatgtctcccttgcgtcagttccgcaagcttccagaggaggtcatcaaaaagatt
gagaagaagaactttcccttcgagcgcctctatgatctgaaccacaatgaaattggtgag
ttgatccgcatgccaaagatggggaagaccattcataagtacgtccatcagttcccaaag
ctggacctggcagttcatctgcagcccatcacacgctccactctgaaagtggagctcacc
atcactccagatttccagtgggatgacaagatacactgctcatctgaggcgttctggatc
ttagtagaggatgtggacagtgaggtcgttcttcatcatgagttcttcctcctgaaggcc
aagtatgctcaggatgagcatcttgtgactttctttgtgcccgtgtttgagccgctgcca
ccacagtacttcattcgcatagcttcagaccgttggctgtcatgtgagacgcaactgcct
gtttcattccgtcacctgatcctgcctgagaaatatcctcctccaactgagctgctggac
ctgcagccattgcccgtgtccgctctgagaaacgcagccttcgagaacctctaccagaac
tttccctttttcaacccaatccagacccaagtgttcaatgcagtgtacaacagcgatgat
aatgtctttgttggcgcccccaccggcagcgggaagaccatatgtgctgagtttgccatt
cttaggatgctcctacacaactcagagggccgctgtgtctacatcacacccatggaggct
ctggctgaacaggtctttattgactggtaccagaagttccaggagactttgaataagaag
gttgtcctgctcactggtgagacgagcactgacctcaagctgctgggtaaaggtgacatc
atcgtcagcaccccagacaagtgggacatcctgtcccgccgctggaaacagaggaagaac
gtgcagaacgttagtctcttcattgtagatgagattcatctcattggaggtgacaatgga
cctgtgttggaggtgatttgctccaggatgaggtacatctcctctcagattgagcggccc
atccgtatcgtggccctcagctcctctctgtctaatgctaaagatgtggcccactggctt
ggctgcagcactacagccaccttcaacttccaccccaatgtcaggccggttcctcttgag
cttcacattcagggctttaacgtgagtcacacacagactcgtctgctgtccatggctaaa
ccagtgtatcacgccataatgaaacattccccatcgaagccagtgctggtctttgtgcca
tcaagacgtcagactcgtctcactgctattgatatcctcaccttctgtgctgcagacgtg
gtcccacaaaggttcctacactcaactgagaaggatctggctccattcatggaaaaactc
tctgatgttacactgaaggagaccctctctaatggggtggggtaccttcacgagggcctt
tcacctacagagcgcaggattgtggagcatctcttcacttctggtgccattcaggtgatg
gtggcatctcgctctctctgctggggcaccaatatttctgcccacctggtgattgtcatg
gacacgcagtactacaacgggaaaatccatgcatatgtggactacccaatctatgatgtg
ctccagatggttggaaaggctaaccgtcctctccaggacgatgagggtcgctgtgtcatc
atgtgtcaagggtcaaaaaaggacttcttcaagaagttcctctacgagcctctgcctgtg
gagtctcacctcgaccactgtcttcatgaccatttcaatgctgagatcgtcaccaagacg
gtggagaacaaacaggatgctgtagactacatgacatggacgttcctgtatcgccgcatg
acccaaaaccccaactactacaacctgcagggtatgtctcatcgccacctgtcagatcat
ctgtctgagctggtggaaaacaccttgcaagatctggaacagtccaagtgcatcagcatc
gaggatgagatggatgtggcacctctgaatctgggcatgatcgcagcctattactacatt
aactacaccaccattgagctgtttagtatgtccctgaacgccaagacaaaggtccgtggc
ctcatcgaaatcatctccaatgctgcagagtataaaaacattcccatcaggcaccatgaa
gacaccctgctgcggcagctggctcagaaagttcctcacaaactgaacaaccccaagttc
aacgacccgcatgtgaagaccaacctgctgctccaggctcatctgtcccgcatgcaactg
agcgctgagctccagtcagatactgaggagatcctcagcaaggctgtgcggctgatccag
gcgtgtgtggatgtgctctctagtaacggctggttgagtccggcgctggctgctatggag
ctggctcagatggtcacacaagccatgtggtccaaagactcgtacctcaaacagctaccc
cacttcacttctgaacacatcaagcgctgcacggacaagggtgtggagagcatcttcgac
atcatggagatggaagacgaggaccgcactggtcttctgcagcttacagatgtccatatg
gcagatgtggcacgattctgtaaccgctatcccaacattgagctgtcgtatgaagtggct
gacaaagacagcatcaagagtggaaatccagtgcttgtccaagtgcagttggagcgagaa
gaggaagttacaggtcctgtcattgcccccctgttccctcagaaacgtgaagaaggctgg
tgggttgttattggagaccccaaatcgaacagtctcatctcaatcaagagactaactctt
caacagaaggccaaggtgaaacttgactttgtggcacctgttgttggtgtgcacaactac
acactgtacttcatgagcgattcctacatgggctgcgaccaggaatacaagttcagcatg
gatgttaaagaagcagacagtgaaggagaaagtgacagtgattaa
DBGET
integrated database retrieval system
