Sinocyclocheilus rhinocerous: 107726309
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Entry
107726309 CDS
T04916
Name
(RefSeq) enhancer of mRNA-decapping protein 4-like
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
srx
Sinocyclocheilus rhinocerous
Pathway
srx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
srx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107726309
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
srx03019
]
107726309
Messenger RNA biogenesis [BR:
srx03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
107726309
mRNA degradation factors
5'-3' decay
Decapping complex
107726309
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40_WDHD1_1st
WD40
Beta-prop_HPS5
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WD40_Prp19
Beta-prop_EDC4L
WDR55
Pdc1_Ge1
EIF3I
Motif
Other DBs
NCBI-GeneID:
107726309
NCBI-ProteinID:
XP_016391340
LinkDB
All DBs
Position
Unknown
AA seq
1391 aa
AA seq
DB search
MASSSNMDIEGATQHLRDILKLDRSGNSADPSLVESQRKPSFNGELNGVLGADLMGAGGL
AAMVEPTTHNSDKLNGQDTQTICLSGDDGSTCVPIRANNVEIVSSRDSSIDSKARGSNKV
KIQPVAKYDWEHKYYYGNLIAVSNSYLAYAIRGANNHSMIRVLRLGSTERSLLKGFTGAV
TDLAFAHLDSTLLGCVDEAGNMFIWQLTSHSSKIQDEVLVHIRRPEDTPLNSNRRLIWCP
FIPEDNDENPEDACQTLALLHEDRAEVWDLDILRSNNSSWPVDATDLKEGFITIRGHTAR
ISEGALSPDGTVLATASHDGYVKFWQIYIEGQDQPRCLHEWQPHNGRPLSCLLFCDNHKK
QDPEVPFWRFLITGADQNQELKMWCTVSWTCLQTIRFSPDPFNSSVLPSLKASLDLSAEF
LILSDVQRKVLYVMELLQDQEKGCANFTAVSEFLLTHPVLSFGVQDVARARLRHTEVLPP
DEESESMTTEGNQGPSESKSGIQIKLYCVHTKSLQDVQIWFQPNQGASSSLFMSQSGSQD
GFGFSDPLADLNVEAMSSDKESGDSGSQNDLSKILALPTPADFMSPAPSALPKLMTPDAF
MTPSTSMPASPGSSASSLTIVTAMSSSDSGARGGDDLAQSPKMSVECGNSSLTLIASAGS
PRSNSILISGLGENIQVSPPNLPLSLDLQAIDPMVVPQASPTRARSPDVISSASTAMSQD
IPEIASETLQRGLAGSSANSVPVLHSDSMASAASVLHLLSPRARSSAEHSLLPLELGAAS
VDGEQRLNNTPSLLETALSQENAVAAGGSCSDGSMNHTWPAAPDITRETRNSHRDNGLGD
CSREEIKDRHISSPYHRRTYHLTQNDSQDASAEQSDHDDEVASLASSSGNCGPRSSHRLP
VKDWKTSPRSSPKLKRKSKKDEGESSQTRQIENQMSTEVQDELLQMLRSQQREIAELRQN
QLDLLQRVTSHMDAVQSSIMAHIEHAMLAQQEQEQRRMERILAEGQSRNQQLQDQLVQQL
VQTLNNSLCNRLDKVLREEMKKTVPQSISKSLEPVTSQMSCTIAAKLTAVEVTLKENVTK
VVKSKNTTDAIGRAAAEAMQGPIQSAYKETFQSIVLPVFERGCQSMFQQINDSFKQGTHE
YIQQLETHIKNRKQRDQDVRDPVIGQLQQMIDTLQNSQDQLATTVTASVCSDVQHQLHMI
VGNLQDSILTQVQRIVKGEVSLAMKEQQAAVTSSIMQAMRSAAGTPVPSAHLDYQAQQAS
ILQLLQQGQLNEAFQLALSAADLNLVLYVCETIDSQQVFGQQPCPLHQAVLLSLIQQLST
NLNTRTELKISYLEDAVMNLDHGDPVTRDHMSAVLSQVRQKLLHFLQQDAHSPLSKRARR
LMMMLQGLVNH
NT seq
4176 nt
NT seq
+upstream
nt +downstream
nt
atggcttccagttccaacatggacatagagggcgcgacccagcaccttcgggacatctta
aaactggatcgttccggtaattcggccgatccctctttggtagagagccagagaaaacca
tctttcaatggagagttgaatggtgttcttggagcggatcttatgggagcaggaggactt
gcggcaatggtggagccaactactcacaactcagacaaacttaatggacaagacacgcag
actatctgtctttcaggagacgatgggtccacctgtgtccccatcagagcaaacaatgtg
gaaattgtgtccagtcgtgactctagtattgacagtaaggctcgtggcagcaacaaggtc
aaaattcagccagtggccaaatatgactgggagcacaaatactactatggcaatttaata
gccgtgtccaactcatacttggcttatgccatcagaggtgcaaacaatcattctatgatc
cgagtgctgcggctgggatcaacggagcgttcgctgctgaagggcttcacaggtgcagtc
acagaccttgctttcgcccacttggactccaccctgttgggctgcgtggatgaggctgga
aacatgttcatttggcaactcactagccacagcagcaaaatacaagatgaagtgttagtt
cacatccgaaggcctgaggacactccactaaattccaaccgcagactcatctggtgtccc
ttcatcccggaggacaatgatgagaacccagaggatgcgtgtcagacattggcactcctt
catgaagacagagctgaggtttgggatctcgacatcctccgatccaataacagctcatgg
cctgtggatgccactgacctgaaagagggtttcatcaccattagaggacacacagcacgc
attagtgagggagcgctgtcccctgatggcactgtcttggccacagccagtcatgatgga
tatgtaaagttttggcaaatctacattgaaggacaggaccagcccagatgcctgcatgaa
tggcagccacataatggacggcctctttcctgcctgctcttttgtgacaaccacaagaag
caagacccagaagttcctttctggcgctttctgatcactggagctgatcagaaccaggaa
ctaaagatgtggtgcacagtgtcatggacgtgcttacaaaccatcaggttttctccagat
ccattcaacagcagtgtgctacccagcctgaaggccagtttggacctgtctgcagaattt
ctcattctcagtgatgttcagaggaaggtgttgtacgtcatggagctgctacaggatcag
gaaaaaggctgtgccaacttcactgcagtttcagagtttctgcttacacaccctgtgctc
agctttggcgtacaggatgtcgcccgcgcccgactgcgccacactgaggtccttccccct
gatgaggaaagcgaaagcatgacgacagaaggaaaccagggaccctccgagtccaaatca
ggaatccagattaagctctactgtgtgcatacaaaatcactacaggatgtgcagatctgg
ttccagcccaatcagggggcctcatcctccctcttcatgtctcagtctgggtcacaggat
ggctttggtttttctgacccactggctgatctgaacgtggaggcaatgagctctgataag
gagtctggtgatagtggatcacagaatgacctgagtaagattctggcgcttccaactcca
gctgacttcatgagtccagccccatcagccttgcccaaactcatgaccccagatgccttc
atgacacccagcacctccatgcccgcttctcctggcagcagtgcaagcagcctgaccata
gtaacggccatgagcagctcggatagcggtgcaagaggcggagatgatctggcccagagc
cctaaaatgtctgtcgaatgtggcaacagcagcttgactctgattgccagcgcaggcagt
ccaagatccaactctatcctcatctcaggccttggggaaaatatccaggtttcccctcca
aaccttcctctctccctggatctccaggccatagaccccatggttgttccccaggcctct
ccgaccagagctcgctctccagatgtcatctcctctgcttctacggcaatgtcccaggac
atccctgagatcgcctcagagaccctgcagaggggactggccggttcctctgctaactca
gtccctgtcctgcattctgacagcatggcatcagccgcatcagtcctccacctgttgtct
cctagagcccggagcagtgctgagcacagtttgctgcctctcgaattgggtgcagcatct
gtggatggagaacagagactcaataacacaccctccctgctggagacagctctgtcacag
gagaacgcggtagcggctggaggatcctgttctgacggcagcatgaaccacacctggccc
gcagcacctgatatcacacgagaaactcgcaacagccacagagacaatggtttgggagac
tgctctagggaggaaataaaggacagacacatttcttctccctaccacaggcgcacttat
cacctgactcaaaatgacagtcaagatgcaagtgcagagcagagtgatcatgatgatgag
gttgccagtctggcctcttcctcggggaactgtggccctcgctcctctcacagacttccc
gtaaaggactggaaaacatctccccgcagctcccctaagctcaagaggaagagcaagaag
gatgaaggagagtcctcacagactagacagattgagaaccagatgagcacagaggtgcag
gatgagcttctacagatgttacggagccagcaaagggagatcgctgagctgagacagaac
cagctggaccttctgcagagagtcaccagtcacatggacgctgtacagagctccatcatg
gctcacattgagcacgccatgttggctcagcaggagcaagaacagagaagaatggagaga
attctggctgaaggacaaagccggaaccaacagctccaggaccagctggttcagcagctt
gtccagacactgaacaacagtctctgcaatcggctagacaaagttttgcgtgaagaaatg
aagaagaccgtcccacagtccatatcgaagagtctagaacctgtgaccagccagatgagc
tgcaccattgctgccaagttaaccgcagtggaagtaacactgaaggaaaatgtcaccaaa
gttgttaaatccaagaacactacggatgctatcggtcgtgctgctgctgaggccatgcag
ggccccatccagtcagcctacaaagagaccttccagagcatcgtgctgcccgtgtttgag
agaggctgccagtccatgtttcagcaaatcaatgacagcttcaaacagggaacccatgag
tacatccaacagctggagacacacattaagaacaggaaacagcgggaccaggatgtacgg
gatcctgtgattggccagctgcaacagatgattgacacgctccagaattctcaagaccag
ctggccaccactgtgacggccagcgtgtgctctgacgttcagcatcagctccacatgatc
gtgggaaatctgcaagactcaatcctgacgcaggtacagcgcatagtgaagggagaggtg
agtctggccatgaaggagcagcaggcagctgtcacctccagcatcatgcaggccatgcgc
tcggccgcaggaacacctgtaccgtccgcacatctggactaccaggcccagcaggccagc
atactgcagttactacagcagggccagctcaatgaggctttccagctggctttatccgca
gcagacttgaatctggtgctgtacgtgtgcgagaccattgactcccagcaagtgtttggc
cagcagccctgtccactgcatcaggccgtccttctgtctctcatccagcaactctccacc
aacctgaacacacgcacagaactcaagatcagctatcttgaagatgctgtaatgaacctg
gaccatggagatccagtcaccagagaccacatgtctgcagtgctgtcccaggtacgacag
aaactcttacacttcctgcagcaggacgcccacagccctctgagcaagcgcgcacggcgc
ctcatgatgatgctgcagggcctggtcaatcactag
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