Sinocyclocheilus rhinocerous: 107727249
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Entry
107727249 CDS
T04916
Name
(RefSeq) DNA repair protein RAD50-like
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
srx
Sinocyclocheilus rhinocerous
Pathway
srx03440
Homologous recombination
srx03450
Non-homologous end-joining
srx04218
Cellular senescence
Brite
KEGG Orthology (KO) [BR:
srx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
107727249
03450 Non-homologous end-joining
107727249
09140 Cellular Processes
09143 Cell growth and death
04218 Cellular senescence
107727249
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
srx03032
]
107727249
03400 DNA repair and recombination proteins [BR:
srx03400
]
107727249
DNA replication proteins [BR:
srx03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
107727249
DNA repair and recombination proteins [BR:
srx03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
107727249
BRCA1-C complex
107727249
NHEJ (non-homologous end-joining)
MRX complex
107727249
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_23
Rad50_zn_hook
AAA_21
AAA_15
SbcC_Walker_B
SMC_N
ATG17_like
AAA_29
Intein_splicing
AAA_13
AAA_22
AAA_16
Motif
Other DBs
NCBI-GeneID:
107727249
NCBI-ProteinID:
XP_016392538
LinkDB
All DBs
Position
Unknown
AA seq
1268 aa
AA seq
DB search
MSKIEKMSILGVRSFGVEDKDKQVITFFSPLTVLVGPNGAGKTTIIECLKYITSGDFPPG
SKGNTFVHDPKDAHETDVRAQIRLQFRDVNGDPVAVQRSMQSTQKGKKTEFKTLEGVITR
VKHGEKVSLSSKCAEMDREMISALGVSKAVINHVIFCHQEESNWPLSEGKALKQKFDEIF
SATRYIKVLETLRVLRMKQTSTVKTCQMELKYLKQNKDKAQEIRELLSAKEAQLSSSKES
VQRIESQIDPLENRLCDIDSSLSKVMKLDNDIKALDSRKKQMEDDNRELEEKMEQVFQGS
DDQLQDMYQNHQRTVKEKERRLTECQRELERAGRECQRMNRIKSELLVEQGRLQLEADRH
TQNIKKRDTQVKSLASSLELEGYDRAPLNERQLQSFHRQVKERLDQDSEALNRTMHDMQE
KEAQKQQSIDDLRDKKTGLERTIELKRDIQAKKQQELKNIKSDLQRLEGSSSRLQELDTE
LQKVERELDNAVQACTVDSLKMEKEEQVRKIKSRHNEELVSLLGHFPSKKELQDWIYSKT
KEINSTRERLSKMNKELASGEQKKTHFTAEIKHKEEQLASYEERLFNVCGSQDFESDLNK
LKDELEKCSKQRAMLAGATAVYSQFISQLTEEGEPCCPVCQRVFPSEAELQDVINDMQSK
LRLVPDKLKNTEHDLKRKEHRRDEMIALKPIRQSIAELQEKELPELRNKLQRVNRDIEKL
KGDTEEQETLLCTLMSEEETAKACLQDISLMDRYQLDLKDVERKIAQHAAKLQGVDLSRT
MQQVSQEKQETQHHLDTTCSKIELKRKLIQDQQDQIQALRSSVNEIRGEKLQISSNMQKR
QQLEEQCVEFSTEIQTLHRDIRDAKEQVSPLAATLEKFQQEKQDLAERRRQKQEEGQEKI
NAIKEKVKNLTLLEREITKYIEDGKDSYKEQKETELQEVDKQLHEAEKQREKINKDMGNI
RQDIDTQKVQERWLQDNLTLRKRVEELKEVSRKHEDLLKEMGNMQVLQLRNERREVERKL
EDLKKNRSVALGRQKGYEDEILRFRKELSEDQYCRAEDLYRDKMIVMRTTELANKDLDIY
YKALDQTIMKFHSIKMEEINKIIRDLWRSTYRGQDIEYVEIRSDVDENASAGLKRRTYNY
RVVMVKGDTALDMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDRENIES
LAHALVEIIKSRSRQRNFQLLIITHDEDFVELLGRSNYVEHFYRIRKNQDQCSEITKCSI
NTLNSYLH
NT seq
3807 nt
NT seq
+upstream
nt +downstream
nt
atgtctaagattgaaaagatgagtatcctgggagtaagaagttttggagttgaggataaa
gacaaacaagtgatcaccttcttcagccctctgacggtccttgtgggacctaatggagct
ggaaaaacgaccatcattgagtgtctcaagtacatcacttcaggagactttccaccagga
agcaaaggaaacacatttgtccatgatcccaaagatgctcatgagacagatgtacgagca
cagatcagactccagtttagagacgtgaatggcgatcctgtggcagtccagaggtctatg
caaagcacacagaagggcaagaaaacggagttcaaaactcttgagggtgtcattacaaga
gtcaagcatggagagaaagtgagcctgagctctaaatgtgctgaaatggaccgtgagatg
atctcagctctgggcgtctccaaggctgttatcaaccatgtcatcttttgccaccaagag
gagtccaactggcctctcagtgaaggaaaggccctcaagcagaagtttgatgagattttc
tcagccacaaggtacataaaggtattggagaccctgcgggtgctgaggatgaagcagacc
agcactgtcaaaacctgccagatggagctcaagtacctgaaacagaacaaagataaagcc
caagagattagagagctgctgtccgctaaagaggctcagctgtcttcctctaaagagagc
gtccaacgcatcgagagtcagattgacccactggagaatcgactgtgtgacatagacagc
agcctcagcaaagtgatgaagttggataatgacatcaaagctctggacagcaggaagaaa
cagatggaggatgataaccgggaactagaggaaaagatggagcaggtgtttcagggctca
gatgatcagctgcaggacatgtatcagaaccaccagaggactgtgaaggagaaggaacgt
agacttacggagtgccagcgtgagcttgaacgggctggccgagagtgccagaggatgaac
cgcatcaaatctgaactgctagttgagcaaggccgtctgcagttggaggcagataggcac
acacaaaacattaaaaagagggacacccaggtcaagagtttagcatcttccctggagttg
gagggttatgaccgggcccctcttaacgagcgacagctccagagcttccacagacaagtc
aaagagagactggaccaggactcagaggcactcaaccgaactatgcatgatatgcaggag
aaagaggcacagaagcagcaaagcatcgatgatctccgagataagaagactggtctagag
agaaccattgagctgaaaagagacatacaggccaagaaacaacaggaactgaaaaacatc
aagtctgacctccaaagactggagggctcctcaagcagactacaggagctggacactgaa
cttcagaaagtggagcgtgagcttgataatgccgtacaggcctgtacggtggacagtcta
aagatggaaaaagaggagcaagtgaggaagatcaagtcgagacataatgaagagctggtg
tctctgctgggacacttcccaagcaagaaagagctacaagactggatctactccaaaacc
aaagagatcaactccaccagagaacggctcagcaaaatgaataaggagcttgcatctgga
gaacagaagaagactcactttactgcagaaatcaaacacaaagaagagcagctggccagt
tatgaagagagactttttaatgtgtgtggcagtcaggactttgaatcagacttgaacaaa
ctgaaggatgagttggagaagtgttccaaacagagagccatgctggcgggggcgacagcc
gtgtacagtcagttcatcagtcagctgacggaggagggcgagccctgctgtcctgtatgt
cagcgtgtgttcccatcagaggcagagctccaggacgtcattaatgacatgcagtccaag
ctgcggctcgtcccggacaaactaaagaacactgagcatgacctgaagaggaaggagcat
aggcgtgatgaaatgatcgcactgaagccaatcaggcagtctatagcagagctccaggag
aaagagctgccagagctcagaaataaactccagcgtgtgaatcgagacattgagaagctg
aaaggcgacactgaggagcaggagacactgctctgcacactgatgtctgaggaagaaaca
gccaaggcctgtctgcaggacatatcactcatggatcgctatcagcttgacctgaaggat
gtagagaggaagatcgctcaacatgcagccaagctgcagggagttgacctcagccgtacc
atgcagcaggtcagccaggagaaacaagagacccaacaccacctggacaccacctgcagt
aagatcgagctgaagaggaaactgatccaggaccaacaggatcagatccaggccttgagg
agcagtgtaaatgagattcgtggagaaaagctccagatctccagcaatatgcagaaacgt
caacagttggaggagcagtgtgtggagttctccactgagatccaaacactccacagagac
attcgagatgcaaaggagcaggtgtctcctctagctgccactctggagaagttccagcag
gagaaacaggaccttgctgagcgcaggaggcagaaacaggaggaaggacaggaaaagatc
aatgcaatcaaggaaaaagttaaaaacttgaccctccttgaaagagagattaccaagtac
atagaagatggcaaagacagctacaaagagcaaaaagaaactgagctacaagaggtagac
aaacaactacatgaggctgaaaagcagcgagagaagatcaataaagacatgggcaacatt
cgacaagatattgacactcagaaggttcaagagcgctggctacaggacaacttgacctta
cggaagcgcgtggaggagctgaaagaggtgtccaggaaacatgaagacttacttaaagag
atgggcaacatgcaagttctgcagctgcgcaatgagcggcgagaagtggagcgaaagttg
gaggacctgaaaaagaaccgcagtgtggctctcggtcgtcagaaaggctacgaggacgag
atccttcgttttcggaaagagctcagtgaggaccaatattgccgggccgaggatctctac
agagacaaaatgattgtgatgagaacaacagagttggccaataaggacctggacatctac
tataaagccctagaccaaacaataatgaagtttcacagcattaagatggaggagattaat
aaaatcatcagagatttatggcggagcacatacagaggacaagacattgagtatgtggag
atacgctctgatgtggatgaaaacgcctctgctggcctgaaaagaaggacctataactat
agagtagttatggtcaaaggagacactgctttggacatgcgtggacgttgcagtgctgga
caaaaggttctcgcctctctcataatacggttggctctggctgagacgttctgtctgaac
tgtgggattctggcactggatgagcccaccaccaacctagacagagagaacatagagtct
ttggcacacgcactggtggagataatcaagagtcgttctcggcagcgtaacttccagctt
cttatcatcacccacgacgaggattttgtggagctcctgggacgatccaactatgtggag
catttctacaggatcaggaagaaccaagaccagtgttcagagatcacgaagtgtagcatc
aacactctcaactcctacctgcactga
DBGET
integrated database retrieval system
