Sinocyclocheilus rhinocerous: 107727962
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Entry
107727962 CDS
T04916
Name
(RefSeq) ribonuclease 3-like
KO
K03685
ribonuclease III [EC:
3.1.26.3
]
Organism
srx
Sinocyclocheilus rhinocerous
Pathway
srx03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
srx00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
107727962
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
srx03019
]
107727962
03009 Ribosome biogenesis [BR:
srx03009
]
107727962
03036 Chromosome and associated proteins [BR:
srx03036
]
107727962
Enzymes [BR:
srx01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.3 ribonuclease III
107727962
Messenger RNA biogenesis [BR:
srx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
107727962
Ribosome biogenesis [BR:
srx03009
]
Eukaryotic type
90S particles
RNase
107727962
Prokaryotic type
rRNA processing factors
107727962
Chromosome and associated proteins [BR:
srx03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Microprocessor complex
107727962
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
dsrm
RM44_endonuclase
Motif
Other DBs
NCBI-GeneID:
107727962
NCBI-ProteinID:
XP_016393495
LinkDB
All DBs
Position
Unknown
AA seq
1289 aa
AA seq
DB search
MSFHAGRGCPRGRPAAPGPMYQPAPPRYHYDPPAAHGPIYNPQGGSGYMPPHPDFMPFHF
PAPSHGSNALPQCPIRPPVFPEPPPFPPLAPHNSDSSVPVPVQSSYPYMMPTVTPPPLPP
VPPSVPPAMPYPPSYPMSYPPQPQLPPPPSFNPAYVQPGGSFKPERSRPPLQYKADSCSR
SPERLRHHDDHRHSGHSYGGYGGRHNREFGGEKRDRGCSSERRRSDSPRCKVDYDRGRVP
SRHRSRERYRHRDEPGSSPSDRHRKHIRNRSGSRERKRRRVEEEKGRRTDSASSSRERSV
NYSRSRDAEETSTDRHEEEKGEEELLKPAWIRCTHAENYYSNDPMDQMGDSTVVGTSKLR
DLYERFEEELGRRQVRAKSSRPKWEPPKTKLDQDQDESSSESECDSDGGGSSCSSSSDSE
VFDVIAEIKRKKAHPDRLHEELWYNDAGQMNDGPLCKCSAKARRTGIRHSIYPGEQPVKA
CRPMSNNAGKLFHYRITVSPPTNFLTDRPTVIEYDDHEYLFEGFSCFSHTPLTNIPLCRV
IRFNIDYTIHFIEEMAPENYCIKGLELFSSYLFKDILELYDWNLTGPADNGQSGCQRFHF
MPRFVRFLPDGGKEVLSMHQVLLYLLRSSTALVPEEEIANMLQWEELEWQKYAEECKGMI
VTNPGMKPSSVRIDQLDREQFNSSVITFPIIVHFGIRPAQLSYAGDPQYQKLWKSYVKLR
HLLANSPKVKQIEKQKLTQREEALQKIRQKNTMRREVTVELSSQGFWKSGIRSDVCQHAM
MLPVLTHHIRYHQCLMHLDKLIGYMFKERCLLQLAMTHPSHHLNFGMNPDHARNSLSNCG
IRQPKYGDRKVHHMYMRKKGINTLINIMSRLGQDDPSPSRINHNERLEFLGDAVVEFLTS
VHLYYLFPNLEEGGLATYRTAIVHLCALNLFNTRKLELDRFMLYAHGPDLCRESDLRHAM
ANCFEALIGAVYLEGGLEEAKQLFGRLLFNSEELRDVWLNYPPHPLQVQEPLTDRQLIES
SPVLQKLTNFEDAIGVLFTHARLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATE
YLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAITNDKTKRPVALRTKTLADL
LESFIAALYIDKDLEFVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPD
IPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYNFPQMAHQ
KRFIERKYRQELKEMRRERERQERDSDEG
NT seq
3870 nt
NT seq
+upstream
nt +downstream
nt
atgtctttccatgctggccgtggatgtccgaggggaagaccagcagctccgggtccaatg
tatcagcccgctcccccacggtatcactacgaccctccagccgctcacggtcccatctat
aaccctcaaggcggcagtggctacatgccacctcatcccgacttcatgccattccatttc
cctgcaccatcacatggctctaacgctctgccccaatgccccatacgtccaccggtcttc
ccagagccgcccccttttcctccacttgctcctcacaactccgacagctccgttccagtt
ccagttcagagctcttacccctacatgatgcccaccgtcacccctccaccccttccacct
gtgccaccctcagtgccacctgccatgccctacccgccatcatatcccatgagctaccct
ccacagccacagctccctcctccaccgagcttcaacccagcttacgtgcagcctggaggt
tccttcaaacctgaacgctcccgcccacctctgcagtacaaggcagactcctgttctcgc
tcacctgaaagacttcgtcaccatgatgaccaccggcacagtggccacagctatggagga
tatggaggccgacataaccgagagtttggaggagagaaacgggacagagggtgcagttca
gagcgcaggcggtcagacagcccacggtgtaaggtggactatgaccgaggacgcgtgccg
tcgagacaccgcagcagagaacgctatcggcatagagatgagccaggttcatccccctca
gacagacacaggaaacacattcgcaatcgctcaggcagtcgagagagaaagcgccgacgt
gtggaggaggagaaagggaggagaacagacagcgcctcaagcagtcgagagagatctgta
aactacagcaggagtagagatgcagaggagacgtctactgaccgccacgaggaggagaaa
ggagaggaggagttactcaaacctgcttggatccgctgtacacatgctgagaactactac
tcaaacgatcccatggaccaaatgggtgactctacagtcgtgggcactagtaagttgaga
gatctgtatgagcgctttgaggaagagcttggtcggaggcaggtgcgggccaaatccagt
aggcctaaatgggaaccacccaagaccaaactggaccaggatcaggatgagagctccagt
gaatcagaatgtgattctgatggaggcggtagcagctgctccagcagttctgactctgag
gtatttgatgtcattgctgagataaagaggaagaaagctcatcctgaccgcctccatgag
gagctgtggtacaatgacgccggacagatgaatgacgggccgttatgcaagtgcagtgcc
aaagccaggcgaactggaatccgacacagtatttatccgggtgaacagccagtgaaagcg
tgtcggccgatgagtaacaatgctggtaaactgttccactacagaataactgtgtcccca
cccaccaacttcctaacagatagacccacggttattgagtatgatgaccacgagtacctt
tttgagggcttttcctgcttctctcacacaccacttactaatatccctttgtgtcgggtt
attcgcttcaacatcgattacaccatccactttatagaagagatggcacctgagaactac
tgcattaaaggcctggaactcttttcctcgtacctctttaaagacatcttggagttgtac
gattggaacctcacaggtcctgcagataacggccagtcaggttgtcagaggtttcatttt
atgccacggttcgttcggttcctcccagatggaggaaaggaggtgctgtccatgcaccag
gtgctgctgtatctgctgcgcagcagcacagctctagttcccgaagaggagatcgcaaac
atgctacagtgggaggagctggagtggcagaaatacgctgaggaatgcaagggcatgatc
gtcaccaaccctggcatgaaacccagttctgtgaggattgaccagttagatcgtgagcag
ttcaattccagtgtcatcactttccccatcattgtgcattttggtatccgacctgcccag
cttagctacgccggagacccgcagtatcaaaagttgtggaagagttatgtgaaattgcgg
cacttgttggccaacagcccgaaggttaaacaaattgaaaaacagaagttaacgcaaaga
gaggaagctctgcagaagatcaggcagaagaatacgatgagaagggaggtcacagtggag
ctcagcagtcagggtttctggaagtctggtatccgctctgatgtttgccagcatgccatg
atgctgccagttctcacccaccacatccgctaccaccagtgcctgatgcatttagacaag
ctgatcggttacatgttcaaagaacgatgcctgctgcagttggcaatgactcaccccagt
catcatctcaattttgggatgaatcctgaccatgctcgcaactctctgtcaaactgtggc
atacgccagcccaaatatggagaccggaaagtgcatcatatgtacatgaggaaaaaggga
attaacaccttgattaatattatgtcaagattgggccaggatgacccgtcaccctccaga
atcaatcataatgagcggttagagtttcttggtgatgcagttgttgagttcctgaccagt
gtgcatctctactacctgttcccaaacctggaggagggaggactcgccacatatcgcaca
gcaatcgttcatctgtgtgcactgaatttatttaatacacgaaaattggagttggatcgg
ttcatgttatatgcccacggccctgacctgtgcagggagtcagacctccgacatgccatg
gcaaactgttttgaggccctgataggggccgtttacctagaaggtggtttagaggaagcc
aagcaactctttgggagactgctgttcaacagtgaggagctgagggacgtttggctcaac
tatccacctcatcctttacaggtacaggagccactgacagacaggcagttgatcgagtca
tctccagttctgcagaaactcacaaattttgaggatgccatcggagtgctgttcactcac
gcacgtctcctcgcacgggccttcactctgcgaacagtgggcttcaaccacctcacccta
ggccacaaccagaggatggagttcctgggagattctatcatgcagctggtggcaacagaa
tatctgttcatccacttcccagaccatcatgaaggacatttgacactactgcgcagctcc
ttggtgaataaccggactcaagcaaaggttgcagaggaattgggcatgcaggaatatgct
atcaccaacgacaagaccaaacggcctgttgccttgcggaccaagactttagccgatctg
ctggagtcattcattgcagctctttacatagataaagacctggagtttgtgcacacattt
atgaatgtttgctttttcccacgactcaaggagtttatcttaaaccaggactggaatgat
ccaaaatcacagctgcagcaatgttgtctaaccctgcggacggagggcaaagagccagac
attcctctatacaaaacacttcagacagttggaccctctcatgccaggacctacacagtg
gcagtgtattttaaaggtgaacggattggctgtggaaaaggaccaagtattcagcaagct
gagatgggtgcagccatggatgcgctggagaaatataactttcctcagatggctcatcag
aaacgcttcattgaaaggaagtaccgacaagaactgaaggagatgagaagagagcgggag
cgacaggagagagatagtgatgaagggtag
DBGET
integrated database retrieval system
