Sinocyclocheilus rhinocerous: 107729497
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Entry
107729497 CDS
T04916
Name
(RefSeq) ATP-dependent RNA helicase DDX42-like
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
srx
Sinocyclocheilus rhinocerous
Pathway
srx03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
srx00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107729497
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
srx03041
]
107729497
Enzymes [BR:
srx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
107729497
Spliceosome [BR:
srx03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
107729497
Complex B
107729497
Complex C
U2 SnRNP specific factors
107729497
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
Cas3-like_C_2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
107729497
NCBI-ProteinID:
XP_016395517
UniProt:
A0A673GGX1
LinkDB
All DBs
Position
Unknown
AA seq
901 aa
AA seq
DB search
MNWNKGGPSGKRGFGFGGFSLASGKKEEPRPPQKAHSAFGASGPSGGYGTNQQLSSFYKI
GTKRANFDEENAYFEDDEEESSSTDLPYIPAENSPTRKQFQSGGGGGGGGGGGSDSEDDP
LDAFMAEVEDQAEKDMRKLEEKEKEKKLAKGIRDDIEEEDDQEAYFRYMAENPTAGLTQE
EDEEEVDYDSDGNPIAPTTKKIIMPLPPIDHSEIDYPPFEKNFYIEHEELSSLTEAGVVE
LRKKLNLKVSGAAPPKPATSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPIALGGRDMI
GIAKTGSGKTAAFIWPMLVHIMDQKELEQGEGPIAVIVCPTRELCQQIHSECKRFGKVYG
LRSVAVYGGGSMWEQAKALQEGVEIVVCTPGRLIDHVKKKATSLQRVTYLVFDEADRMFD
MGFEYQVRSIASHIRPDRQTLLFSATFRKKIEKLARDILVDPIRVVQGDIGEANEDVTQI
VEVLQTGQEKWGWLTRRLVEFTSAGSVLIFVTKKTNCEELATNLNQEGYSLGLLHGDMDQ
SERNKVIADFKKKNLPVLVATDVAARGLDIPSIRTVVNYDVARDIDTHTHRIGRTGRAGE
KGLAYTLLTTKDTSFAGDLVRNLEGANQSVSKELMDLAMQNPWFRKSRFKGGKGKKLNIG
GGGLGYRERPGLGSESTERSSSGGSALGNYEAYKPSTGAMGDRMSALKQAFQSQYKNHFV
AASGLPPKLTTKSSSSSGWTSAGSLSSLPSGAPEGPDRTHLSYSPSSSSSFSSMLPPPAL
SSGTKMSGFSSAGSLSSVSDSYSSSSSKEGSRSDRNADDRGHRGDSHYRHTDRHSGGDRD
RYAERDRHSDRDRHSDSRNGEGSHRDREGRSERDGGERSGTHKDSFAVPDPPKHKKSRWD
N
NT seq
2706 nt
NT seq
+upstream
nt +downstream
nt
atgaactggaacaagggaggcccgagtggcaagcgaggctttggattcgggggattctct
cttgcgagtgggaagaaagaggaacctcgtcctccccagaaggcccactctgcatttgga
gcttcaggaccatcaggtggatatggcacgaatcagcagctttcgtctttttacaaaata
ggaacaaaacgagccaatttcgacgaggagaatgcttattttgaggatgatgaagaggag
tctagcagtacagatctgccgtatatacccgccgagaactctcccactagaaagcagttc
cagtctggaggaggaggaggaggaggaggaggcggcggctccgacagtgaggatgaccct
cttgatgcttttatggctgaggtggaggaccaagcagaaaaagacatgaggaaacttgaa
gaaaaggaaaaagagaaaaagttagccaagggtatacgggatgacattgaagaggaggat
gaccaagaagcatattttcgttacatggcggaaaacccaacagctgggctgacccaagag
gaagatgaggaagaagtggactatgacagcgatggaaaccccattgctcctacgaccaaa
aagattatcatgccactgcccccaatagaccactcagagattgactatcctccctttgag
aagaatttctatattgagcatgaggaactcagcagtctgactgaggccggagtggtggaa
ctgagaaagaaactcaatctgaaggtttcaggtgcagcccctcctaaaccagccaccagt
tttgcccattttggatttgacgagcagctcatgcaccagatccgtaaatctgagtacact
caacccacacccatccagtgccagggtgttccgatagctttgggtggcagagacatgatt
ggcattgccaaaactggcagtggaaagactgcagctttcatttggccaatgctggtgcac
atcatggaccagaaggagctggagcagggagagggacccattgctgtgatcgtctgcccc
accagagagctctgtcaacagatccattctgaatgcaagcgcttcgggaaggtgtatggc
ctccgctcggtggcagtatatggaggcggcagcatgtgggaacaagccaaagctctacag
gaaggagtcgaaattgttgtctgcaccccgggtcgcctgatcgatcatgtgaagaagaag
gctacatctctgcagcgagtgacctacctggtgtttgatgaagctgatcgcatgttcgat
atgggctttgaataccaagtgagatccattgccagccatatcagacctgatcgacagact
ttgttattcagtgcaacatttcggaagaaaattgaaaagctggcacgagatattttggtc
gaccccattcgtgttgtgcagggagacataggagaggctaatgaagatgtcactcagata
gtggaggtgctgcagactgggcaggaaaagtggggttggctgacacgcagactggttgag
ttcacctcagctggctctgtgctgatctttgtcactaaaaagactaactgtgaggaactg
gctacaaatctcaatcaggaaggttatagcctagggctgctgcatggagacatggatcag
agcgagaggaacaaagtcatcgctgactttaagaagaagaatctgcccgtattagtagct
actgatgttgccgctcgtgggttggatattccatctatccgtacagttgtgaactacgat
gtagcacgagacattgacacacatacacatcgaattggtagaacaggtcgtgcaggagag
aagggtttagcttacactctgctcaccactaaagacacttcatttgctggtgatctggtt
cgaaatttagagggagccaatcagagtgtttcaaaggagctgatggacctggcaatgcag
aatccctggttcaggaagtcccgctttaagggagggaaagggaagaagctaaatattgga
ggtggaggcctgggttacagagagagaccaggccttggatctgaatccactgagcgcagt
agtagtggtggttctgctctgggtaactatgaagcctacaaaccatcaactggggccatg
ggagaccgtatgtctgccctgaagcaagcatttcagtctcagtataaaaaccactttgtg
gcagcgtctggtcttcctccaaaactcaccacaaagtccagcagctcctccgggtggacc
agtgcgggaagtctaagttctttgccttcaggagcaccagagggacctgacagaacccac
ctgtcctactctccatcgtcctcttcctcgttttcctccatgctgccgccccctgccctc
agctcgggcaccaaaatgagcggcttcagcagtgcaggctccctgagctcagtttcagac
tcttactctagctcttcttcaaaagaggggtcccgtagcgataggaatgctgacgacagg
ggccatcgtggagatagtcattatcgtcacactgacaggcatagtggcggagaccgtgat
cgctacgcagaaagggaccggcatagtgacagagatcgtcacagcgatagccgaaatggt
gaagggagccatagggacagagagggacggtcagaaagggatgggggcgagaggtcaggg
actcataaagacagctttgcagttcctgatccccccaaacataagaaaagcagatgggac
aattaa
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