Sinocyclocheilus rhinocerous: 107729915
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Entry
107729915 CDS
T04916
Symbol
taf5l
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
srx
Sinocyclocheilus rhinocerous
Pathway
srx03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
srx00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
107729915 (taf5l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
srx03021
]
107729915 (taf5l)
03036 Chromosome and associated proteins [BR:
srx03036
]
107729915 (taf5l)
Transcription machinery [BR:
srx03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
107729915 (taf5l)
Coactivators
SAGA/TFTC/STAGA complex
107729915 (taf5l)
Chromosome and associated proteins [BR:
srx03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
107729915 (taf5l)
STAGA complex
107729915 (taf5l)
TFTC complex
107729915 (taf5l)
SAGA complex
107729915 (taf5l)
SLIK complex
107729915 (taf5l)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
WD40_CDC20-Fz
Beta-prop_EML_2
EIF3I
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
Beta-prop_TEP1_C
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
Beta-prop_IFT122_1st
NBCH_WD40
Beta-prop_RIG_2nd
TFIID_NTD2
WDR90_beta-prop_4th
ANAPC4_WD40
Beta-prop_SCAP
Beta-prop_IFT140_1st
Beta-prop_Vps41
Beta-prop_DCAF4
RMC1_N
WD40_RFWD3
Beta-prop_EIPR1
Beta-prop_HPS5
Beta-prop_SPT8
PROPPIN
Beta-prop_IP5PC_F
PEP5_VPS11_N
Beta-prop_WDR19_1st
Beta-prop_WDR75_2nd
WD40_like
Ge1_WD40
Nbas_N
Cytochrom_D1
TRIP13_N
DUF2379
Ala_racemase_N
Motif
Other DBs
NCBI-GeneID:
107729915
NCBI-ProteinID:
XP_016396140
LinkDB
All DBs
Position
Unknown
AA seq
548 aa
AA seq
DB search
MKRVRTEQIQYAVSQYLKRRQYIDTDGSLKGAKLSQSAEEMAASLTVQTESSCANVVSAA
PCHSDPQQYETQFSRLRSFLQDAEALLVKEVSGVLFPLFLYLHLDMVRCGLKGAVDSFYS
RFHSFFQQDPEQKAIVDLLRGAVTPQVEVTAARRTDYQLYGAGIGAGNTTSTSSSSAAVE
GAERVEVTAGLPQNEAALEALQDCIKRVREGAPSLTTVCFYAFQHTDQLLNTAEVSADSR
LLAAGFDNSAVKLWSLRARKLKAGPHWTDVSKIRLACDVLEEEADDEDASGSEIKTLHAH
SGPVYRTAFLTDGSGLLSCSEDSTVRLWDLSSFTNTVLYRGHAYPVWDVDVSPCSLYFST
ASHDRTARLWSFARTYPLRLYTGHLSDVDCVKFHPNSNYVATGSTDKTVRLWSTQQGASV
RLFTGHRGPVLSLAFSPNGKYLASAGEDQRLKLWDLASGSLFKDLRGHSDSITSLSFSQD
SSLVASASMDNSVRVWDIRSAHGSAPSDGSSSELIGQYTGSTSNILNVQFMACNLLLVTG
TVLEKQEQ
NT seq
1647 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgggtgcggacggagcagatccagtatgcggtgagccagtacctgaagaggagg
cagtacatagacacagatgggtctctgaagggggccaaactctcccagtccgctgaggag
atggcagccagtctgacagttcagacggagtccagctgtgcgaatgtggtgtctgcagcc
ccgtgtcactctgacccgcagcagtacgagacccagttctccagactgcgctccttcctg
caggatgctgaagcactgttagtgaaggaggtgagcggcgtcttgtttccgctcttcctc
tacctgcacctggacatggtgcggtgtggcctgaagggggcggtagactcgttttacagt
cgcttccactcgttcttccagcaggaccctgagcagaaagcaatcgtagacctgctacga
ggagccgtcacgcctcaggtggaggtgacagcagcgcgcagaaccgactaccagctgtac
ggcgcagggataggagcgggaaacacaacctccacttcctcttcctccgctgcggtggag
ggggcggagcgtgtggaggtcacggctgggttacctcagaacgaggcggcgctggaggcg
ttgcaggactgcataaagcgcgtgcgggaaggtgcgccttcgctcaccaccgtctgcttc
tacgccttccagcacacggatcagctgctgaacacggccgaggtgtctgcggacagccgc
ttgctggcagccggcttcgataactcagccgtcaagctgtggagtctgcgggccaggaag
ctgaaggcggggcctcactggaccgacgtgtctaaaataagactggcctgtgacgtgttg
gaggaggaggcagatgacgaggacgcctcgggcagtgagataaagaccctgcatgctcac
agcggccccgtgtaccgcacggcgttcctgacggacggctccggcctgctgtcctgttcg
gaggactccaccgtgcgcctctgggacctgagcagcttcacgaacaccgtcctgtaccgc
ggccacgcctaccccgtctgggacgtggacgtcagtccctgcagcctctacttctccacg
gcgtcccacgaccgcaccgcgcgcctctggagcttcgcgcgcacctatccgcttcgtctg
tacaccggacacctctccgacgtcgactgcgtcaaattccaccccaactccaactacgtg
gcgacgggctccacggataaaaccgtgcgcctgtggagcacgcagcagggggcgtccgtg
aggctgttcaccgggcaccgcgggcccgtgctgtcgctcgccttctcgcccaacggcaag
tacctggcctcggccggagaggaccagagactgaagctgtgggatctggcgtccggcagc
ctgttcaaagacctgcggggtcacagcgatagcatcaccagcctctccttcagtcaggac
agcagtctggtggcctccgcctccatggataactcagtgcgggtgtgggacatacgcagc
gcccacggcagcgcccccagcgatggctccagcagcgagctgatcggacagtacacaggc
agcactagcaacatcctcaatgtgcagttcatggcctgcaacctgctgctggtgacaggc
acggtgctggagaaacaggaacagtga
DBGET
integrated database retrieval system
