KEGG   Sinocyclocheilus rhinocerous: 107730915
Entry
107730915         CDS       T04916                                 
Name
(RefSeq) THO complex subunit 3
  KO
K12880  THO complex subunit 3
Organism
srx  Sinocyclocheilus rhinocerous
Pathway
srx03013  Nucleocytoplasmic transport
srx03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:srx00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    107730915
  09122 Translation
   03013 Nucleocytoplasmic transport
    107730915
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:srx03019]
    107730915
   03041 Spliceosome [BR:srx03041]
    107730915
Messenger RNA biogenesis [BR:srx03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     107730915
Spliceosome [BR:srx03041]
 Complex C
  Other components
   EJC/TREX
    107730915
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    107730915
SSDB
Motif
Pfam: WD40_CDC20-Fz WD40 WD40_Prp19 Beta-prop_EML_2 WD40_WDHD1_1st ANAPC4_WD40 WDR55 EIF3I Beta-prop_CAF1B_HIR1 Beta-prop_WDR19_1st Beta-prop_RIG_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_2nd Beta-prop_IFT140_1st Beta-prop_IFT122_1st WD40_MABP1-WDR62_2nd Beta-prop_EML eIF2A Beta-prop_Vps41 NBCH_WD40 Beta-prop_TEP1_C WD40_RFWD3 Beta-prop_WDR35_TULP_N RMC1_N Beta-prop_HPS5 WD40_MABP1-WDR62_1st WDR90_beta-prop_4th B-prop_COPA_B_2nd Beta-prop_WDR75_1st Beta-prop_NUP159_NUP214 Beta-prop_SPT8 PD40 Beta-prop_EIPR1 Peptidase_S9_N Beta-prop_NWD2_C Beta-prop_Nup120_160 PROPPIN Cytochrom_D1 Beta-prop_ELP1_1st WD_LRWD1 Beta-prop_WDR11_1st DPPIV_N Beta-prop_SCAP YNCE Beta-prop_DCAF4 NAGLU_N
Other DBs
NCBI-GeneID: 107730915
NCBI-ProteinID: XP_016397358
UniProt: A0A673KKP5
LinkDB
Position
Unknown
AA seq 322 aa
MASSYHQEMQEVFRNNNKSREFPAHNAKVHSVAWSCDGKRLASGSFDKTASVFVLEKDRL
VKENNYRGHGDSVDQLCWHPTNPDLFVTASGDKTIRIWDVRTTKCMATVSTKGENINICW
SPDGQTIAVGNKDDVVTFIDAKTHRPRAEEQFKFEVNEISWNNDNDMFFLTNGNGCINIL
SYPDLKLIQSINAHPSNCICIKFDPTGKYFATGSADALVSLWDVEELVCVRCFSRLDWPV
RTLSFSHDGKMLASASEDHFIDIAEVETGEKLWEIQCESPTFTVAWHPKRPLLAYACDDK
EGKYDSNREAGTVKLFGLPNDS
NT seq 969 nt   +upstreamnt  +downstreamnt
atggcgtcctcatatcatcaggagatgcaggaggtcttcaggaataacaataaaagcaga
gagttcccggctcacaatgctaaagtgcattcggtggcgtggagctgcgatggaaaacga
ctggcgtccggatcatttgacaaaaccgccagcgtgttcgtcctggaaaaagaccgactg
gtgaaggaaaacaactaccgagggcatggagacagtgtggatcagctgtgctggcatccc
accaaccctgatctgttcgtcaccgcatcaggagacaagaccatccgcatctgggacgta
cggaccaccaaatgcatggccacggtcagcaccaaaggggagaatatcaacatttgttgg
agtcctgatggtcagaccattgctgtcggcaacaaggatgatgttgtgaccttcattgat
gccaagacgcaccgtccccgtgccgaggagcagttcaagtttgaggtcaatgagatctcc
tggaataatgacaatgacatgttcttcctgacgaacggaaatggctgtattaatatatta
agttaccctgatctcaagctcatacagtcaattaatgcccatccgtccaactgcatctgc
attaaatttgatcccacgggcaagtattttgccacaggaagtgcagatgcgctggtcagt
ctgtgggatgtggaggagctggtgtgtgtgcgctgcttctccagactcgactggcctgtg
cggacgcttagtttcagtcatgatgggaaaatgctggcgtcagcctctgaggatcatttc
attgacattgctgaagtagagacgggtgagaagctctgggagattcagtgcgagtctccg
accttcactgtggcgtggcatccgaagagaccgctgctggcgtatgcctgcgacgataaa
gagggcaaatatgacagcaaccgagaggcagggaccgtcaagctctttggacttcccaat
gactcctga

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