Sinocyclocheilus rhinocerous: 107731038
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Entry
107731038 CDS
T04916
Name
(RefSeq) collagen alpha-1(XXVII) chain B-like
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
srx
Sinocyclocheilus rhinocerous
Pathway
srx04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
srx00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
107731038
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
srx00536
]
107731038
Glycosaminoglycan binding proteins [BR:
srx00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
107731038
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
GH131_N
Laminin_G_2
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
107731038
NCBI-ProteinID:
XP_016397495
LinkDB
All DBs
Position
Unknown
AA seq
1681 aa
AA seq
DB search
MEPDNAPNSRLKAAGVGGRAVFLCMVLYCTCCLMFAQAQSADVDVLQRLGLVGKRPSGTR
FTPQGVIPFKSGVILTQRARIDVPVSSVVPASLGSAFCLILSVCSHRINNAFLFTIVTKR
KRLQLGVQFIPGQILVYLGQKNTVNFDYDVHNGQWHNLALEIQAQSVTLYTSCGKTSVHA
NLHFKNEETLDPEGSFRLGKMSQNSVQFEGAICQFDVHPSAKAAHNYCKYIKKQCREADT
YRPNLPPLLPLLPLDPNLSVTLQTPNVVTEVNDRHLSLTQEKVHVNHETSQGLNTSVLIT
SQSVQSTVPPTIAQPTLQLPLQATAQTAMASFGSRTSQISPKPTQQSSPRKNIMKASVKP
QILIENEMAVTAGPTGQQKNKLDQIQTPATIKPKPYSKARVSETTTLASRRHSPKETSKP
SSFEPVTPAATDGFQTFDLEPTQFSFLAGSPVQKGEPGPPGPPGPPGEPGLPGKRGPRGP
PGPHGNPGRPGTPGSKGKKGDPGISPGRALNGIKGDPGVLGLPGLPGQAGRKGQKGHPGP
SGHPGDQGERGPDGSPGAKGYPGRQGLPGPIGNMGPKGVRGFIGIPGVFGLPGPDGERGL
PGVPGKKGKMGRPGFPGDFGERGPPGPDGNPGEMGVPGPVGIPGFIGDMGLVGIVGLPGL
IGPKGVPGSPGESGLKGDKGEVGLPGEPGEPGFQGDKGNQGSPGLPGIRGKPGQQGKPGD
QGPDGLPGPPGPEGFPGDIGPPGQNGAEVPKGNAGMRGIPGPRGDPGLEGDQGQVGPPGA
SGLEGRPGRKGFSGNPGEDGVKGEPGFPGNPGMLGERGLIGFVGPVGEVGFPGEKGDRGE
MGLPGPPGEKGAMGHPGAPGERGPSGPAGTPGPPGSRGLSGTRGPKGRMGARGPDGPVGE
KGVMGMKGPEGPPGKQGFSGLMGQIGETGETGPTGFPGVQGPTGPPGAKGILGEPGPQGP
PGVLGPLGEIGAVGLPGKVGERGLPGEPGEKGAYGSPGNMGEQGLIGPRGDPGLDGEAGL
SGPDGAKGEKGDIGMEGETGEKGAIGFKGTEGRPGDPGLMGVMGPEGKPGKTGERGKPGE
KGSKGHQGHLGETGPVGEQGAMGFIGPKGSRGTTGFMGAPGKMGRQGEPGLVGYEGHQGP
QGPMGSPGPKGEKGEPGDDGKVEGPTGPLGDIGPVGNRGERGQPGDPGYPGHEGVYGERG
NSGAPGLPGNAGPKGFAGPKGSKGNKGPKGKNGPHGESGSRGSPGPVGIPGPRGVVGREG
LEGDPGVEGALGKDGAKGMPGEHGSDGEVGLPGKSGPQGNAGVPGLPGIQGTFGPKGERG
IPGQTGPPGKRGFNGGMGFPGKQGDRGVKGQLGDTGEQGFPGILGMFGPKGPPGDLGPVG
IQGPKGPQGLMGMQGAIGPVGIIGPSGNPGPQGDKGYKGEMGAQGPPGSRGPPGPPGLPG
VSFSHENEALGAALHVVMDSRSTLRSEKYEDTDFPMLDQGTEIFKTLHYLSTLIHSIKNP
LGTQENPARMCSDLFECEHKLNDGTYWIDPNLGCFSDNIEVTCNFTNGGQTCLKPVAVSK
LEIGVSLIQMNFIHLLSSEAVQIITIHCLNVSVWAAGHSKTPSSSAVYFKAWNGQIIESG
GFIEPELIKDECWITDGRWHKTQFIFQTQDPNLLPIVEVYNLPSTKSGSHYLLEVGPVCY
L
NT seq
5046 nt
NT seq
+upstream
nt +downstream
nt
atggagccggacaatgccccgaactccagactcaaagcagctggagtcggggggagagct
gtctttctctgcatggttctttactgtacatgctgtctgatgtttgcacaagcacagtct
gcagatgtggacgtgctgcaaagactgggattggttgggaaaagaccatctgggacacgc
ttcacaccacaaggtgtcatccccttcaaatcgggagtcatcctaacccagagggcacga
attgatgtcccagtgagctccgtcgtccctgcgtcactgggctcggcattctgtctcatc
ctcagcgtatgttcgcatcgcataaacaatgctttcctcttcaccattgtgacaaagagg
aaacgactgcagctaggggtgcagttcatcccagggcaaattttagtttacttgggccaa
aagaacactgtaaattttgattatgatgttcacaatggccagtggcacaacctggctttg
gaaatccaggcccaaagtgttacattatatacttcttgtgggaagacaagtgtacatgca
aatttgcattttaaaaatgaggaaacgctggatccagagggctcctttcgattgggaaaa
atgagccagaactcggtgcagtttgaaggagccatctgtcagtttgatgttcatccctct
gctaaggcagctcacaattattgtaagtacattaaaaaacagtgcagggaagctgacacg
tatcgaccaaacctccctcctcttttaccgctattacccctggatcccaatttatctgtc
acccttcagaccccaaatgtggtaacagaggtaaacgacagacatctttcattaacacaa
gagaaagtacacgttaatcatgaaacctcacaaggcctgaacacctctgttctaattaca
tctcagtctgtacaaagcacggtgccaccgacgatagcccagcccacactacagctcccc
ctgcaggccacagcacaaactgccatggcctcctttgggagtaggacatcacaaatatct
ccaaagccaactcaacaaagcagccccaggaagaacatcatgaaggcatctgtaaagccc
cagatattgatagaaaatgagatggctgtcactgccggaccaacaggccaacagaagaac
aaactggaccaaatccagacccctgccacaataaaacctaaaccttatagcaaagccagg
gtgtcggagacgacaacattagcatcacgcagacattcaccaaaggagacctccaaaccc
agctcttttgagcctgtcacccctgcagccacggatggtttccaaaccttcgaccttgaa
ccaacccaattctccttcttggctgggtcaccagtacagaaaggagaaccaggaccaccg
ggacctccaggacctcccggcgagccaggattaccaggaaagagaggacccaggggtccc
cctggtccacatggaaatccaggccgcccagggacccccggatccaagggaaaaaaggga
gaccctggaatctcacctggcagagcactaaatggaataaagggggaccctggggtatta
ggactacctggactacccggtcaagctggtcggaagggacagaaaggccatcctggtccc
tctggccaccctggagatcaaggagaaagaggaccggatggaagcccgggtgccaaaggt
tatcctggcaggcagggtttgccggggcctataggaaatatgggaccaaaaggcgtacgg
ggcttcattggaatcccaggtgtctttggtcttcctggacctgacggagaaagaggttta
cctggcgttcccgggaagaagggcaagatgggtaggccgggctttccaggagattttggg
gagcgaggaccaccaggacctgatggaaacccaggggagatgggtgtcccaggtcctgtt
ggcatcccaggttttattggtgatatgggccttgttggaattgtgggtcttcctggatta
ataggaccaaagggtgtaccaggaagcccaggcgagtctggactgaaaggtgataagggt
gaagtcgggttgccaggtgaaccgggagaacctggatttcaaggtgacaagggtaatcag
ggctcaccaggtttaccaggaattcgaggaaagccaggacaacaggggaagcctggagat
caaggcccagatggtttgccaggcccacctggccctgagggttttccaggagatattgga
ccaccaggacagaatggtgctgaggtcccaaaggggaatgcaggaatgagagggattcca
ggccctagaggagatcctggacttgagggagatcagggccaagtaggaccaccaggggct
tcaggactagagggcagacctgggaggaagggtttctctgggaatccaggggaggatgga
gtgaagggagagcctggatttcctggaaatcctgggatgcttggtgagaggggtcttatt
ggttttgtcggacctgttggtgaggtggggtttcctggagaaaagggagatcgtggtgag
atgggtctgcccgggccacctggagaaaagggagcgatgggacacccaggggccccggga
gagaggggcccatctggaccagcaggtacaccagggcctcctgggtctaggggcctcagc
ggcaccagaggacccaaaggcagaatgggtgcgaggggcccagatggaccagtcggagag
aaaggagtgatgggaatgaagggtcctgaaggtcccccgggaaaacaaggtttcagtgga
ctaatgggtcaaattggtgaaactggtgaaacaggaccaactggatttccaggtgttcaa
ggaccaactggacctcctggagcaaagggcatcttaggagaacctggtcctcaagggcca
ccaggagtattaggtcctttgggtgagattggagcagtgggtttacctgggaaggttggg
gagcgaggcttaccaggtgaaccaggagagaagggtgcatatggatctcctgggaatatg
ggagagcaaggcttgattggacctcgaggtgaccctgggcttgatggggaggctggtctg
agcggcccagatggagctaagggtgaaaagggtgacattggaatggaaggagaaacaggt
gaaaagggagccatcggatttaaaggaacagaaggccgtcccggagatcctggcttaatg
ggtgtcatgggccctgagggcaaacctggaaaaactggtgagaggggaaaacctggagag
aagggcagcaaaggtcaccagggtcaccttggcgagactggaccagtgggagaacaaggt
gccatgggtttcattgggccaaaaggaagcagaggaactactgggtttatgggtgctccg
ggaaaaatgggtcggcaaggagaaccaggtttagtgggatatgaaggtcatcaaggacca
caaggtccaatgggatccccaggaccaaaaggtgaaaagggagagccaggtgatgacggg
aaggttgaaggtccaactggtcctttaggtgacatcggacctgttggcaacagaggagaa
aggggacagccaggtgaccctggatacccaggtcatgaaggtgtttatggggaaagagga
aactcgggggctcctggactccctggaaatgcaggtccaaaaggttttgcaggacctaaa
ggatccaaaggcaataaaggtccaaaaggcaaaaacggtccacatggtgaatctggaagt
cgagggtcccctggtcctgttggtattcctggccccagaggagttgttggtcgtgagggt
cttgagggtgatcctggggtagaaggagctcttgggaaagacggagctaaaggaatgcca
ggtgagcatggaagtgatggtgaggttggtctgcctggaaaatcaggtcctcaaggaaac
gcaggtgtgccaggtctgccaggaattcaaggcacttttgggccaaagggtgaaaggggc
atccctggccaaactggacctccaggaaaaagaggatttaatggaggaatgggatttcct
ggaaaacaaggagaccgaggggtcaaagggcaacttggtgatactggtgaacagggattt
cctggaattcttggaatgtttggaccaaaggggccacccggagaccttggcccagtgggt
atccagggcccaaagggtcctcagggtttaatggggatgcaaggagccattggacctgtt
ggtatcattgggccaagtggtaacccaggaccacaaggagacaaaggatataaaggggaa
atgggtgctcagggacctccaggtagtcgtggaccacctggacctccagggcttcctggt
gtttctttttctcatgaaaatgaggcccttggtgctgctttacatgttgttatggattcc
cgctctactttaaggtccgagaagtatgaagatactgactttccaatgctggaccaggga
acggagatctttaagactcttcactacctcagcactctgatccacagcattaagaatccc
ctgggaacacaggagaatccagccagaatgtgcagtgatctgtttgagtgcgagcacaag
ttgaacgatggcacttattggatagatcctaacctgggctgcttttctgacaatattgaa
gtgacctgcaacttcaccaatggaggtcaaacctgccttaagccagttgctgtgtccaag
ttggagattggagtgagtctgatccagatgaacttcatccacctcctgagctctgaagct
gtgcagatcatcaccattcactgcctgaacgtctctgtttgggcagcagggcactccaaa
acaccttcctctagtgcggtgtactttaaagcctggaatggacagataatcgagtctggg
ggattcatcgagcctgaactgataaaggatgagtgctggatcacagatggccgatggcat
aagacacagttcattttccagacacaggacccaaacttactgcccattgtggaggtctac
aacttgcccagcacaaaatctggatcacattacctccttgaagtgggccctgtatgctat
ttataa
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