Sinocyclocheilus rhinocerous: 107732782
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Entry
107732782 CDS
T04916
Name
(RefSeq) CCR4-NOT transcription complex subunit 1-like
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
srx
Sinocyclocheilus rhinocerous
Pathway
srx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
srx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107732782
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
srx03019
]
107732782
Messenger RNA biogenesis [BR:
srx03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
107732782
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
107732782
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
107732782
NCBI-ProteinID:
XP_016399684
LinkDB
All DBs
Position
Unknown
AA seq
2276 aa
AA seq
DB search
QFLIQECVCLITKPNFISTLCYAIDNPLHYQKSLKPSPHLFTQLSKVLKLSKVQEVIFGL
ALLNSSNADLRGFAAQFVKLKLPDLLRSYVHADLGGNQEGGFQDIAIEVLHLLLSHLLFG
QKGSSGVGQEQIDAFLKTLCRDFPQERCPVVLAPLLYPDKRDILMDRILPDSGELNKTMM
ESSLADFMQEVGYGFCASLEECRNIILQYGVREVTASQVARVLGMMARTHSGLSDGIGLQ
SISNPVGGGIWSDGKDKSDCSQAHTWNVEVLIDVVKEVNPNLNFKEVTYELDHPGFLIRD
SKGLQIVVYGIQRGLGMEVFPVDLIYRPWKHAEGQLSFIQHSLMSPEVFCFVDYPCHTVA
IDILKAPPEDDNREIATWKSLDLVESLLRLSEVGHYEQVKQLFSFPIKHCPDMLVLALLQ
ISTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMHSMAEWYMRGE
QYDQAKLSRILDVAQDLKSLSMLLNGTPFAFEPFIQACVTFLKRRCPSIMGGLAPEKDQP
KSAQLPPETLATMLACLQSCAGSVSQELSETILTMVANCSNVMNKARQPPPGVLPKGRAP
STSSLDAISPVQMDPLSAMGSLSLGVSSTSHTPSMQGFPSLQGSAFSNPQSPAKAFSNLP
NPTPSTAFPGINPLSSQLQGPLSSSLTGIGSGLGMPAVSSDPFGTRKMSTPGLNPPTFQQ
TDLSQVWPEANQHFSKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSNIKRERE
VFNCMLRNLFEEYRFFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPF
GSKMYYFGIAALDRFKNRLKDYPQYCQHLASIAHFLQFPHHLQEYIEYGQQSRDPPVKMQ
GSITTPGSLALAQAQAQSQTPKAPLPGQVSTLVTTATTTTTAAKTTTITRPTAVGPKKDV
PPSINTTNIDTLLVATDQTERIVEPPENVQEKIAFIFNNLSQSNMSQKVEELKETVKEEF
MPWVSQYLVMKRVSIEPNFHSLYSNFLDTLKNPEFVKMVLNETYRNIKVLLTSDKAAANF
SDRSLLKNLGHWLGMITLAKNKPILYTDLELKSLLLEAYVKGQQELLYVVPFVAKVLESS
LRSVIFRPQNPWTMGIMNVLAELHQEHDLKLNLKFEIEVLCKNLSLDISELKPGNLLRDK
EKLKNLEEQLSAPKKETKPPEEMLPIVTTDSVPFTAAPSTPATTTTCTATGPPTPQFSYH
DINVYALAGLAPHININVNIPLLQAHPQLKQCVRPAIERAVQELVHPVVDRSIKIAMTTC
EQIVRKDFALDSEESHMRVAAHHMMRNLTAGMAMITCREPLLISIATNLKNSFAAALRAP
TPQQREMMEEAAARIAQDNCELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRY
CDPMVLTYQAERMPEQIRLKVGGVDPKQLAVYEEFARNVPGFLPSNDLSQPTGFLAQPMK
QQAWPTDDVAHIYDKCISDLEQHLHAIPPALAMNPQTQAIRSLLEAVVMARTSRDGIAAL
GLLQKAVEGLLDATSGADPDLLLSYRECHLLVLKALQDGRAYGPQWCNKQITRCLIECRD
EYKYNVEAVELLIRNHLVNMQQYDLHLAQSMENGLNYMAVAFAMQLVKLLLVDERSVSHI
TEADLFHTIETLMRTNAHSRANAPEGLPQLMDVVRSNYEAMIDRHHGGPNFMMHSGISQA
SEYDDPPGLREKAEYLLREWVNLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFF
RLCTEMCVEISYRAQAEQQHPTTSPAIIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKI
NLLNKVLGIVVGVLIQDHDVRQTEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFC
NTFHILRPTKAPGFVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLR
NVELNKPMQILYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNM
RLPDPFTPNLKVDMLSEINIAPRILTNFTGVMPSQFKKDLDSYLKTRSPVTFLSELRSNL
QVSNEPGNRYNIQLINALVLYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDT
EGRYLFLNAIANQLRYPNSHTHYFSCTMLYLFAEANAEAIQEQITRVLLERLIVNRPHPW
GLLITFIELIKNPAFKFWSHDFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
6831 nt
NT seq
+upstream
nt +downstream
nt
caatttctgatccaggagtgtgtgtgtcttattacgaaaccaaattttatttcaacgctt
tgctacgccattgacaatcccctgcactatcaaaagagtttgaaaccatcacctcattta
tttactcagctgagtaaagttcttaagctaagcaaggttcaggaggtgatttttggcctt
gctctgctgaactccagtaacgcagacctccgagggtttgctgctcaatttgtgaagctg
aagctccctgacctcctccgctcgtacgtgcacgcagacctcggagggaatcaggaaggt
ggcttccaggacattgccatagaggttctgcatctgctcctctcccatcttctgttcggc
cagaagggctcgagcggagtcggacaagagcagattgacgcgttcctcaaaacactgtgc
agagatttcccacaggagcgctgtcctgtggtgcttgcaccactgctgtaccctgacaaa
cgggacattctcatggaccggatcctgccagactctggagaattgaacaagaccatgatg
gagagttcacttgctgacttcatgcaagaagttggctatggcttttgtgcaagtcttgaa
gagtgcaggaacataatcctgcagtatggggtgcgagaggtgacagccagtcaggtggcc
agagtgctgggcatgatggcccgcactcactctgggctgtccgatggcatcggcctgcag
tccatctcaaatccagtgggtggtgggatctggagtgatgggaaggacaagagtgactgc
tctcaggcccacacctggaatgttgaagttctaattgatgtggtcaaagaagtgaacccc
aatctgaatttcaaagaggtgacctatgagctggatcacccaggcttcctgatccgggac
agtaaggggcttcagatagtggtctatgggatccagaggggtctaggaatggaggtgttc
ccagtggatctcatctacagaccatggaagcatgcagaaggacagctgtcattcattcaa
cactcgctgatgagtcctgaagtcttctgctttgttgactacccctgtcatactgttgcc
attgacatcctgaaggccccacctgaggatgacaacagagaaatagccacatggaagagc
ttggacctagtggagagcctcttgcgcctctctgaagtcgggcattatgaacaggtgaag
cagctcttcagctttcccatcaagcactgcccggacatgctagtgctggcgctgctacag
atcagcacctcctggcacaccctgcgtcatgagctcatctccaccctcatgcccatcttc
ctgggcaaccaccccaactctgccatcatcttgcactatgcctggcatggacagggccag
tccccctccatccgccagctgatcatgcactctatggctgagtggtacatgagaggagag
caatacgaccaggccaagctatcccgcatcctggatgtggctcaggacttgaagtctcta
tcgatgctgctgaatggtactccatttgcctttgagccgttcatccaggcgtgtgtcaca
ttcctgaagagacgttgtccctctatcatgggtggtttggccccagagaaagaccagccg
aaaagtgctcaacttcctcctgaaacactggctaccatgcttgcatgtctgcagtcttgt
gctgggagtgtgtctcaagagctgtcagagacaatcttgaccatggtggccaactgtagc
aatgtgatgaacaaggcccggcagccgccaccaggagtcttgccaaagggacgagctccc
agcaccagcagcttagatgctatttcacctgtgcagatggaccctctctctgcgatgggc
tctttgagtctaggtgtctcgtccacctctcacaccccgagcatgcaaggattccccagc
ctgcagggctctgccttcagtaacccccagtccccagccaaagccttctcaaacctgccc
aacccgacccccagcacagctttcccaggaatcaaccccctctcttctcagctccaaggt
cctctgagctcaagcttgactgggattggctcaggtttgggcatgcccgctgtcagcagt
gaccccttcggcaccaggaagatgagcacaccggggttgaacccgcccaccttccagcag
actgacctctctcaggtgtggcccgaggcaaaccagcactttagtaaggagatagacgat
gaggcaaacagctacttccagcgcatctacaaccatccgccgcaccccacaatgtccgtg
gatgaggtgctggaaatgctgcagagatttaaggactcgaacatcaagcgggaacgggaa
gtttttaactgtatgctgaggaatctgtttgaggagtaccgattcttccctcagtatcca
gacaaagagctacacatcaccgcttgcctctttggggggatcattgagaaaggcctggtc
acatacatggcgctgggcttggccttacgatatgtcctggaagccttacgcaaacctttc
ggatcaaagatgtattactttgggatcgctgcactagatagatttaaaaatagactgaag
gactatcctcagtactgtcagcacttggcgtcaatagcccatttcctgcagtttccgcac
catttacaagagtatatagagtatggccagcagtccagagaccctcctgtgaagatgcaa
ggctccattaccaccccaggtagcctggctttagcccaggctcaagctcagtctcagacc
cccaaagcccctctacctggccaggtcagcaccttagtgaccacagccaccacaacaacc
accgctgccaaaaccaccaccatcacgagacctacagctgttggaccgaagaaggacgtg
ccaccttcaatcaacaccacaaacattgacaccttgttggtggccacagaccaaactgaa
aggatcgttgagcccccagagaatgttcaggagaagattgcattcatcttcaacaacttg
tcccaatcaaacatgtcccaaaaggtggaggaactgaaagagactgtgaaagaagaattc
atgccctgggtctctcagtacctggttatgaagcgtgtcagcattgagcccaacttccac
agcctgtattctaacttcctggacacactgaaaaacccagagtttgtcaagatggttctc
aatgagacttacagaaacatcaaggtcctccttacctctgataaggcagctgctaacttc
tcagatcgatccctgctgaagaatttgggtcactggcttggaatgatcaccctagctaaa
aacaaacccatcctgtacacagacctggagctgaaatctctcttgctggaggcttatgtg
aaaggccaacaggagttactgtatgtcgtcccctttgtggccaaagtcttggaatcaagt
ctacggagtgtgatcttcagaccgcagaacccttggaccatgggtatcatgaatgtactg
gctgagctccaccaggaacatgacttaaagcttaacctcaagtttgagattgaggtgctc
tgcaagaatctgtctttggacatcagtgagctaaaaccaggaaacctactgagagacaaa
gagaagctgaagaacttggaggaacagctctctgcaccaaagaaagagaccaagcctcct
gaagagatgctgcctatagttacaacagattctgttccatttacagctgctccgtcaact
ccggccaccaccacgacctgtacggccactggaccacccacaccacagttcagctaccat
gacatcaatgtgtatgccttggctggcctggccccgcacatcaacatcaatgttaacatc
ccattactacaggcccaccctcagctgaagcagtgtgtgagaccagcaattgagcgtgct
gtacaggaactggttcacccagtggtggaccgatccatcaagattgccatgaccacctgt
gagcagatagtcaggaaggacttcgcactagactctgaggagtctcacatgcgtgtggcc
gcccaccacatgatgcgtaacctgaccgccggcatggccatgatcacctgcagggagcct
ctgctcataagcatcgccaccaacctgaagaacagctttgctgcagctcttagggctccc
acaccccagcagagagagatgatggaagaggcggctgctcgcattgcacaggacaactgt
gagcttgcttgttgctttatccagaagacagcagtggagaaagctggaccagagatggac
aagaggctggcaactgaattcgagctgaggaagcatgctcgccaagaaggccgtcgctac
tgtgaccctatggtgctcacctatcaggctgagcgcatgccagagcagatcagactgaag
gtcggtggagtggatcctaaacagctggctgtttatgaggagtttgcccgtaatgtccca
ggcttcctacccagtaatgacctgtctcagcccactggtttccttgcccaaccaatgaag
caacaggcatggcccacagatgatgtggctcacatctatgataagtgcatttcggacctg
gagcagcacctgcatgcaattccacctgccctagccatgaacccacagacccaggccata
cgcagccttctggaggctgttgtcatggctaggacctcccgtgatggcatcgctgccctg
ggccttttgcagaaggctgtcgagggtctgctggatgccaccagtggcgctgatcctgat
cttttgctgagctatagggagtgccacctactggtgctgaaagccctacaggacggtcgt
gcctacggtccacagtggtgcaacaaacaaatcaccagatgcctgattgagtgcagagat
gaatacaagtacaacgttgaggccgtagagctcctcattagaaaccacctggtcaacatg
cagcagtatgacttacacctggctcagtccatggagaacgggctcaactacatggccgtg
gcattcgccatgcagctggtgaagctcctactggttgacgaacgtagcgtgagtcacatc
actgaagcggatctcttccacaccattgagacgctgatgaggaccaatgcccactccaga
gccaatgctcctgaaggtttgccccagctgatggatgttgtccgttccaactatgaggcc
atgatcgatcgtcaccatggtgggccgaacttcatgatgcactctgggatttctcaagcc
tctgagtacgatgacccaccaggccttagagagaaagcagagtacctgctgagagaatgg
gtcaacctgtaccactcagcagctgcaggaagagacagcaccaaggccttctctgcattt
gttggccagatgcaccagcagggcatcctgaagaccgatgacctcatcactcgctttttc
cggctgtgcacagaaatgtgcgtggagatcagttaccgcgctcaagccgaacagcagcac
ccaaccaccagccccgccatcatcagagccaagtgctaccataacctggatgcttttgtt
cggctcattgcgcttcttgtcaaacactccggagaggccaccaacacagtcaccaaaatc
aacctgctcaacaaggttctaggcattgtggtgggtgtattgatccaggatcacgatgtg
aggcagacagagttccagcagcttccgtaccacagaatcttcatcatgctcctgctggag
cttaacgcaccagagcatgtgctggagaccatcaacttccagaccctcactgccttctgt
aacacctttcacatcctgaggccaactaaagcacctggttttgtctatgcttggctggag
ctcatctcacaccggatcttcattgccaggatgcttgcgcataccccacaacagaagggt
tggccaatgtatgcccagctgctgatagacttgttcaagtatcttgcacccttcctaagg
aatgttgaactcaacaaacctatgcaaattctctacaagggaacacttcgtgtgctgctt
gtcctgctacatgacttcccagagttcctgtgcgactaccattatggtttctgcgacgtc
atcccgcccaactgcatccagctgaggaacctgatcctgagtgccttcccccgcaacatg
aggcttccagaccccttcacccctaatctgaaggtggatatgctgagtgagatcaacatc
gctccccgcatcctcactaacttcaccggtgtgatgccatcccagtttaagaaggatctt
gactcctacctcaagacccgttctcctgtcaccttcctttctgagctgcgcagcaacctg
caggtgtccaacgagccaggcaaccgttacaacattcagctgatcaacgctctggtgctg
tacgttggaacccaggccattgcccacatccacaacaagggtagcactccctccatgagc
accatcactcactcggctcacatggacatcttccagaacctcgcagtcgatctagacact
gagggccgctatctgttcctgaatgcgatagccaatcagctgcgttatccaaacagccac
acacactactttagctgtaccatgctgtatctgtttgccgaggccaacgctgaagccatt
caagagcagatcaccagggtcctgctggagaggctaattgtgaacaggccgcacccatgg
ggtctgctcatcaccttcattgagctgatcaagaaccctgcctttaagttctggagccat
gattttgtgcactgtgccccagagatcgagaagttgttccagtcggtggctcagtgctgc
atggggcagaagcaggcccagcaggtgatggagggaacgggtgccagttag
DBGET
integrated database retrieval system
