Sinocyclocheilus rhinocerous: 107737898
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Entry
107737898 CDS
T04916
Name
(RefSeq) polyadenylate-binding protein 1-like isoform X1
KO
K13126
polyadenylate-binding protein
Organism
srx
Sinocyclocheilus rhinocerous
Pathway
srx03015
mRNA surveillance pathway
srx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
srx00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
107737898
09123 Folding, sorting and degradation
03018 RNA degradation
107737898
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
srx03019
]
107737898
03041 Spliceosome [BR:
srx03041
]
107737898
Messenger RNA biogenesis [BR:
srx03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
107737898
mRNA cycle factors
Stress granule specific factors
107737898
Spliceosome [BR:
srx03041
]
Complex C
Other components
Complex C specific factors
107737898
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_Nup35
RRM_10
RRM_5
RRM_3
PABC_AtC3H46
Motif
Other DBs
NCBI-GeneID:
107737898
NCBI-ProteinID:
XP_016405056
LinkDB
All DBs
Position
Unknown
AA seq
633 aa
AA seq
DB search
MNPSAPSYPMASLYVGDLHSDVTEAMLYEKFSPAGPILSIRVCRDMMTRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGRPLRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE
AEMGARAKEFTNVYIKNFGEDMDDEKLREIFSKFGPALSIRVMTDDSGKSRGFGFVSFER
HEDAQRAVDEMNGKELNGKQVYVGRAQKKGERQTELKRKFEQMKQDRMTRYQGVNLYVKN
LDDGLDDERLRKEFAPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT
KPLYVALAQRKEERQAHLTSQYMQRMASVRAVPNPVLNPYQPAPPSGYFMAAIPQAQNRA
AYYPTSQLAQLRPSPRWATQAVRPQHFQSMPNAVRPSGPRPQAFGAMRPANQVPRVITPQ
RMASQAMGPRPTAAGAATGPAQVRGVPQYKYAPGVRNPQQHMPTQPQVPMQQPAVHVQGQ
EPLTASMLAAAPPQEQKQMLGERLFPLIQNMHPSLAGKITGMLLEIDNSELLHMLESPES
LRSKVDEAVAVLQAHQAKEAAQKSVPSTAVPAV
NT seq
1902 nt
NT seq
+upstream
nt +downstream
nt
atgaaccccagcgcgcccagttacccgatggcttctctgtatgtgggggatctgcactcg
gacgtgaccgaggccatgctgtacgagaagttcagtccagccgggcccatcctctccatc
cgggtctgcagggacatgatgacccgccgctcgctcggttacgcctacgtcaacttccag
cagcccgccgacgctgagcgcgccttggacaccatgaactttgacgtgatcaagggccgg
cccctccgcatcatgtggtcccagcgagacccgtcgctgcgcaagagcggcgtgggaaac
atcttcatcaagaacctggacaagtccatcgacaacaaggccctctacgacacgttctct
gccttcggcaacattctgtcctgcaaggtggtttgcgatgagaacggctctaaaggatac
ggctttgtgcactttgagacccatgaggccgcagaaagagccattgagaaaatgaacggc
atgttgctcaatgaccgcaaagtgttcgtcggtcgctttaagtctcgtaaggagcgtgag
gcagagatgggcgctcgcgccaaagagttcacaaacgtttacatcaagaacttcggagaa
gatatggatgacgagaagctgagggaaattttcagcaaatttggtccagcgctcagcatt
cgcgtcatgactgacgacagcggcaaatctagaggcttcggcttcgtcagctttgagagg
cacgaggacgctcagagggccgtggatgagatgaatggaaaagagctgaacgggaagcag
gtgtacgtgggtcgcgcgcagaagaagggagagcgccagacggagctcaagcgcaagttt
gagcaaatgaagcaggaccgcatgactcgctaccagggagtcaatctctacgtgaaaaat
ctggacgacggcctcgatgatgagcgtctgcgtaaagaattcgcaccgtttggcacgatc
accagcgctaaggtgatgatggaaggcggccgcagcaagggctttggcttcgtctgcttc
tcgtctcctgaagaagccaccaaagccgtgacggagatgaacggtcgtatcgtggccacc
aagccgctgtatgtggctctggctcagaggaaggaggagcgtcaggcgcatctcaccagt
cagtacatgcagaggatggctagcgtcagagccgtgcccaaccctgtcctcaacccctac
cagccagcgccaccgtctggatacttcatggctgctattccacaggctcagaatcgtgct
gcttactatcccaccagtcagctcgctcagctccgccccagtcctcgctgggccactcag
gcagtccgccctcagcatttccagagcatgcccaacgccgtcagaccctcggggccccgt
cctcaagcgttcggcgccatgcgtccagcaaaccaggtcccgcgggtgatcacgccccag
cgcatggcgtctcaggccatgggccctcgacccaccgccgcaggggccgccacagggccg
gctcaggtgagaggagtgccgcagtacaaatatgcacctggagtccgcaacccacagcag
cacatgcccactcagccgcaggtgcccatgcagcagcctgctgtccacgttcagggtcag
gagcctctgacggcgtctatgttggctgccgcgcctccacaagaacagaagcagatgctg
ggtgagcgtctgttcccgctcatccagaacatgcatcccagtctggctggaaagatcacc
ggaatgctgctggagatcgacaactctgagctgctgcacatgctggagtctccggagtcc
ctgaggtcaaaggtggatgaagcagttgcggtgctgcaggctcatcaggccaaagaagct
gcccagaaatcagtccccagcaccgctgtgccagccgtctaa
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