Sinocyclocheilus rhinocerous: 107742498
Help
Entry
107742498 CDS
T04916
Name
(RefSeq) pre-mRNA 3'-end-processing factor FIP1 isoform X1
KO
K14405
pre-mRNA 3'-end-processing factor FIP1
Organism
srx
Sinocyclocheilus rhinocerous
Pathway
srx03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
srx00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
107742498
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
srx03019
]
107742498
Messenger RNA biogenesis [BR:
srx03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
107742498
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Fip1
Motif
Other DBs
NCBI-GeneID:
107742498
NCBI-ProteinID:
XP_016410964
UniProt:
A0A673HKE9
LinkDB
All DBs
Position
Unknown
AA seq
596 aa
AA seq
DB search
MSSSLQEHPTETEGSVDCSVNIIQYVCFLYSYSPEEKMSAEEADKTTTTDASAGDEEEEW
LYGDEGESKETEEEETKLTAAISATSAPPVTEEVTATTNNTTTTITTTTGNGVASQEEAP
GEDEDSESDSDDDDDDVRVTIGDIKTGAPQYTAYGGTPVNLNIKSAGSRAYGAVGTKLKG
IDLEAPGSINGVPVLEVDMESFEEKPWRKPGADLSDYFNYGFNEDTWKAYCEKQKRLRMG
LDILNIGSTTSKISVQQGRTGNSEKEITVAAHAAKADFSSPSNLYKAGLNPARISPPHWA
GPASQEMSYYTKMPGTIDVIGGQTASISRVEGRRRHNLEGNNIQVISEHPSSEAEPAKMP
PPFFPPGPLPPNIPPPPFLPPPVSQAPPLIPPPRMPITIPPPNFPPPTGGPPPSLIPTMD
NSGHPGGYDGRPVAPYPFPTGGFPPPMQGAVNPWPGLMDNPKQWDYYPRRDKEREKERER
ERPRERGHERDHSPSAVVYNSDEERYRSYRDYGDRGYERHRERSSREKEERHRERRHREK
EEGRHKSSRSSSRRRHDSEEGDSHRRHKHKKSKRSKEGKEPSEERSADQENQEAME
NT seq
1791 nt
NT seq
+upstream
nt +downstream
nt
atgtcctcaagtctgcaagaacatcctacagagactgaaggaagtgtggattgctccgta
aacatcattcaatacgtttgttttctatattcgtatagcccagaggagaagatgtctgca
gaggaggcggataaaaccaccaccactgatgcgagtgcaggagacgaggaggaggaatgg
ctgtacggggatgaaggtgaaagtaaagaaactgaagaagaggagaccaaactgacagca
gccatcagtgcgacctctgctcctcctgtaaccgaggaggtcaccgcgaccacaaacaac
accactaccaccatcaccaccactactggaaatggtgtggccagtcaggaggaagcacct
ggagaagatgaagacagtgagagcgatagtgatgatgacgatgatgatgtccgcgtcacc
attggcgatataaaaacaggagcgcctcagtacactgcatatgggggaactccagtgaat
ctaaacataaagtcagctggcagcagagcatatggagcagtaggtactaaattgaagggc
atagacctcgaagctccaggcagcatcaatggagttccagtcctggaagtggacatggag
tcctttgaggagaaaccatggaggaagccaggtgcggacttgtctgactattttaactat
ggttttaacgaggacacgtggaaagcatattgtgaaaagcagaagaggttacgcatgggc
cttgacattctcaacattggatccaccaccagcaagatctcagttcagcagggtcgcaca
ggtaacagtgagaaggagatcacagttgcagctcatgcagctaaagcagacttttcctct
ccatctaacctgtataaagcaggtctcaacccagcgaggatatcccctccacactgggca
gggcctgcctctcaagaaatgtcctattatacgaagatgcccgggaccatagatgtgatt
ggcggacagactgcctccattagcagggtggaaggacgacgtcgccacaatctggagggg
aataacatccaggtgatctcggaacatcccagctctgaggctgaacccgccaagatgcct
cctcctttctttcccccgggaccgctgcctccaaacatcccacctcctccattcctccct
cctcctgtcagtcaggctccacctctgatcccacctccacggatgcccatcaccattcct
ccacccaattttccccctcctactggaggacctcctccttcacttatccctactatggac
aacagtgggcacccaggaggatatgacggacgtcctgttgctccatacccttttcctaca
ggtgggtttcctccacccatgcaaggagctgttaacccctggcctggtttgatggacaac
ccaaagcagtgggactactaccctcggcgagacaaagagagggaaaaagagcgagagaga
gagaggccgagggaaaggggtcatgagagagaccatagtccctctgctgtggtttataac
agtgatgaagaacggtatcgttcttaccgtgattacggagacagagggtatgagaggcat
cgggagcgatcgagccgtgagaaggaggagcgtcacagggagaggagacacagagagaaa
gaggaagggaggcacaagtcatcacggagcagtagcagacggagacatgacagcgaggag
ggtgacagtcaccggcgccacaagcacaagaagtccaaaaggagcaaagagggcaaggag
cccagtgaggagcgttctgctgaccaggagaaccaggaggccatggagtaa
DBGET
integrated database retrieval system
