Sinocyclocheilus rhinocerous: 107743694
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Entry
107743694 CDS
T04916
Name
(RefSeq) TFIIH basal transcription factor complex helicase XPD subunit
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
srx
Sinocyclocheilus rhinocerous
Pathway
srx03022
Basal transcription factors
srx03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
srx00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
107743694
09124 Replication and repair
03420 Nucleotide excision repair
107743694
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
srx03021
]
107743694
03036 Chromosome and associated proteins [BR:
srx03036
]
107743694
03400 DNA repair and recombination proteins [BR:
srx03400
]
107743694
Enzymes [BR:
srx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
107743694
Transcription machinery [BR:
srx03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
107743694
Chromosome and associated proteins [BR:
srx03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
107743694
DNA repair and recombination proteins [BR:
srx03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
107743694
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD_2
HBB
Helicase_C_2
ResIII
DEAD
SesA
SNF2-rel_dom
Motif
Other DBs
NCBI-GeneID:
107743694
NCBI-ProteinID:
XP_016412554
UniProt:
A0A673L2W9
LinkDB
All DBs
Position
Unknown
AA seq
760 aa
AA seq
DB search
MKLNIEGLLVYFPYDYIYPEQYSYMLELKRTLDAKGHGVLEMPSGTGKTISLLSLIVAYQ
KAYPLEVTKLVYCSRTVPEIEKVVEELRKLMDYYAKQTGAKNDFLALALSSRKNLCIHPE
VSSLRFGKEVDGKCHSLTASYIRAQHHSNPSQPVCQFYEQFDAVGRQVPIPPGIYNLDDL
KDFGRRKGWCPYFLARYAILHANIVVYSYHYLLDPKIADLVSKELTKKSVVVFDEAHNID
NVCIDSMSVNITRRTLDRCQTNVETLQNTISRIKETDAAKLREEYRRLVEGLKEANVARE
TDMYLSNPVLPDEILQEAVPGSIRTAEHFVGFIKRFLEYLKARLRIHHVVQESAPQFLKD
IYEKVCIDRKPLRFCAERLRSLLRTLEIADIADFSAITLISHFATLVSTYSKGFTIIIEP
FEDRTPTIANPVLHFSCMDPSIAIKPVFGRFQSVIITSGTLSPLDIYPRILDFHPVTTAS
FTMTLARTCLCPLIVGRGNDQVAMTSKFETREDFAVIRNYGNLLLEMSAIVPDGIVAFFT
SYIYMENIVASWYEQGILENIQRNKLIFIETQDAAETSMALEKYQEACENGRGAILLSVA
RGKVSEGIDFVHHFGRAVIMFGVPYVYTQSRILKARLEYLRDQFQIRENDFLTFDAMRHA
AQCVGRAIRGKTDYGLMIFADKRYARADKRGKLPRWIQEHLTDGSLNLTIDETVQLAKHF
LRQMAQPFRQEDQLGLSLLTLEQLQSEDMLQKIAQIAQQA
NT seq
2283 nt
NT seq
+upstream
nt +downstream
nt
atgaagctgaatatcgaggggttattagtctactttccgtatgactacatttatcctgaa
caatactcgtacatgcttgagctgaagaggacgctggacgcaaagggtcatggagttctc
gagatgccttcaggaacaggaaaaacaatttctcttctttccctcattgttgcttaccag
aaggcttaccctttagaagtcaccaagcttgtctactgttctcgcacagtgcctgagata
gagaaggttgtggaggagctaaggaaactaatggattattatgcaaagcaaacaggagcg
aaaaatgacttccttgcactggcactttcttcacggaaaaacctgtgcattcatcctgag
gtgagctctctgcgttttggaaaagaagtagatggaaagtgtcacagtctgacagcatca
tatattcgtgcgcagcatcacagtaacccaagtcaacctgtctgccagttctatgagcaa
tttgatgcagtaggcagacaggtgcccattccccctggtatatataacttggatgatctg
aaggactttgggcgtagaaaaggctggtgtccgtacttcctggcacgttacgcaattctt
cacgcaaacattgtagtgtacagctaccattacttacttgatccaaaaattgcagacctg
gtctcgaaagagctcacaaagaaatctgtagttgtgttcgacgaggctcacaacatcgat
aatgtctgtattgattccatgagcgtcaacattaccaggaggactctcgatcgctgtcag
actaatgtggaaaccctgcaaaacaccattagcagaattaaggaaacagatgctgccaaa
ctcagagaagaatacaggagattagttgaaggccttaaagaagcaaatgttgccagagaa
actgacatgtatctgtccaacccagttctgccagatgaaatccttcaagaggctgtacct
ggcagcattcgcactgcagagcacttcgtgggctttataaagcgcttcctggagtacctg
aaggcacgtttgcgaatccatcatgtggtgcaagagagtgcccctcagttcctcaaagac
atctatgagaaggtctgcattgaccgcaaacccctgagattttgtgcagagcggctgcgc
tcactgctgaggacgctggagatcgcagacattgctgacttctcagccattactttgatc
tcacactttgccacacttgtcagcacttacagcaaaggctttaccatcatcattgagccc
tttgaagatagaacgccaacaatagcaaatcctgttcttcacttcagttgcatggacccc
tctatcgccataaagccagtgtttgggcgctttcaatcagtcatcatcacatcagggaca
ctctctccgctggacatctacccacgtatccttgatttccacccagtcactacggcatcc
ttcaccatgacactggcacgaacctgtctgtgccctcttattgttggcagagggaatgat
caagtagcgatgacctccaagtttgagaccagagaagattttgctgtgatccggaattat
ggaaacctgctgctggaaatgtctgccatcgttcctgatgggatcgttgcgttcttcacg
agttacatatacatggagaacattgtggcttcatggtatgaacagggcatccttgagaac
atccaaagaaacaagctcattttcatagaaacccaggatgcagctgagaccagcatggcc
ctggagaagtatcaagaggcctgtgaaaacggcagaggagcaattctgctctcagtggca
agagggaaagtgtcagaggggattgactttgttcatcattttggccgtgccgttatcatg
tttggagtgccgtacgtttacacccagagccgaatcctcaaggcacggttggaatacctc
agagatcagtttcaaatccgggaaaatgactttctgacgtttgatgcgatgcgccatgcg
gctcagtgtgtgggcagagccatccgaggcaaaacagactacggcctgatgatctttgca
gataagcgttacgcacgagcggataagcgaggaaagctgccccgctggattcaggaacac
cttacagatggaagcctaaatcttaccattgatgagactgtgcagttagccaagcacttt
ctacgacagatggcccagcccttcagacaggaggatcagttgggtctgtccctgctgacc
ctggaacaactgcaatctgaggacatgcttcagaaaattgctcagatcgctcaacaagcc
tga
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