Sinocyclocheilus rhinocerous: 107744798
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Entry
107744798 CDS
T04916
Symbol
rpa1
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit
KO
K07466
replication factor A1
Organism
srx
Sinocyclocheilus rhinocerous
Pathway
srx03030
DNA replication
srx03420
Nucleotide excision repair
srx03430
Mismatch repair
srx03440
Homologous recombination
srx03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
srx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
107744798 (rpa1)
03420 Nucleotide excision repair
107744798 (rpa1)
03430 Mismatch repair
107744798 (rpa1)
03440 Homologous recombination
107744798 (rpa1)
03460 Fanconi anemia pathway
107744798 (rpa1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
srx03000
]
107744798 (rpa1)
03032 DNA replication proteins [BR:
srx03032
]
107744798 (rpa1)
03400 DNA repair and recombination proteins [BR:
srx03400
]
107744798 (rpa1)
Transcription factors [BR:
srx03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
107744798 (rpa1)
DNA replication proteins [BR:
srx03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
107744798 (rpa1)
DNA repair and recombination proteins [BR:
srx03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
107744798 (rpa1)
MMR (mismatch excision repair)
107744798 (rpa1)
DSBR (double strand breaks repair)
HR (homologous recombination)
107744798 (rpa1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
Motif
Other DBs
NCBI-GeneID:
107744798
NCBI-ProteinID:
XP_016414112
LinkDB
All DBs
Position
Unknown
AA seq
602 aa
AA seq
DB search
MTVRLSEGAIESLTKGIEVSNPVLQCVNIRKIDGGNGLSRFRVMMSDGLHTMSSFMLSTQ
LNPMAEQNQLATNCVCMLKRSVANVLKDGRRVVVILDMEVIKSADQMAGKIGDPTPYVEG
QSKPQQSTAPAPTVRPLQPQNGSDGSMNRPDQSFGKKPMTAPSTPGGSSKVVPIASLNPY
QSKWTVRARVTNKNSIRTWSNSRGDGKLFSMELVDESGEIRATGFNHEVDKFYSLIEQGK
VYYISKGTLKIANKQFSSLKNDYEMTLNGETSIIPCEDSHDVPKVQCDFVSIADLESREK
DTIVDVIAVCKNTEDMTRIMTKNSREVSKRNIQLMDMSGRVIQLTMWGNDAETFDGSGQP
ILAIKGARLSDFGGRSLSTLYSSTVMINPDIPEAYKLRGWYDKEGHAIDGQSMTELRGPG
GGGGNTNWKTLAEVKNEHLGHGDKADYFSCIATIVYIRKENCLYQACPSKDCNKKVVDQQ
NGMYRCEKCDKEFPDFKYRLMLSANIADFGDNQWVTCFQDSAETLLGQNSGYLGQLKDSN
EAAFDEVFQHANFNTFVFRNRVKMETYNDESRIKVTVVDAKPVDHREYSKRLIINIRKLA
AQ
NT seq
1809 nt
NT seq
+upstream
nt +downstream
nt
atgactgttcgattgtcagaaggggcaattgagtccctgacaaaaggaattgaagtcagc
aaccctgttctgcagtgtgtgaacattcgcaagattgatgggggaaatggcctgtcccgt
ttccgtgtcatgatgagtgatgggctgcacactatgtcctcattcatgctctccacacag
cttaatcccatggctgagcaaaaccagttggccactaactgtgtgtgtatgctgaaaaga
agcgtcgctaatgttctcaaagatggacgacgtgtggtagttatactggacatggaggtg
atcaagtctgctgaccagatggcaggaaaaattggagacccaactccttatgtggagggc
cagtcaaagccacaacagagtacagctccggctccaactgtacgtccattacagcctcag
aatggaagtgatggttcaatgaacagacctgatcagagcttcgggaaaaagcccatgact
gcccccagcactcctggaggcagctctaaagttgtgcccattgccagcctcaatccatac
cagtcaaaatggactgttagagccagagttaccaataagaattccatccgcacatggagt
aactccagaggggacgggaagctcttctccatggagcttgtggatgaaagcggggagatt
agagcaactgggtttaatcacgaggtggacaaattctactccctcattgagcagggaaaa
gtctactacatctcaaaaggcactctgaagattgccaacaaacaattctcttcacttaag
aatgactatgaaatgactctaaatggcgagacaagcatcatcccttgtgaggacagccat
gatgtccccaaggtgcagtgcgactttgtttctattgctgacctggagtcccgggagaaa
gacaccatcgtagatgtgattgcagtgtgtaaaaacacagaggatatgacgcgcatcatg
accaagaacagtcgtgaggtttcgaagaggaacatccaactgatggacatgtccggcaga
gtcatccagctcaccatgtggggtaatgatgcagagacgtttgatggcagtgggcagcct
atcttggccattaagggagcaagattgtctgactttggtgggcgttctctctccactctc
tacagcagcacggtcatgatcaaccccgacattcctgaggcatacaaactgcggggatgg
tatgataaggaaggacatgctatagatggacagtcgatgactgagttaagaggacctggt
ggtggtggtggaaacacaaactggaagaccctggcggaagtcaagaatgagcacttagga
catggagacaaagctgattatttttcttgcatcgccaccatagtctacatccgtaaagag
aactgcttgtatcaggcctgtcccagtaaagactgcaacaagaaggtggtggaccagcag
aatggcatgtaccgctgtgagaaatgcgacaaagagttccccgacttcaaatatcgtctc
atgctctcggccaacattgctgattttggagacaaccaatgggtgacttgctttcaggac
agtgcagagaccctcctgggccaaaactcaggttatctcggccaactcaaggactcaaac
gaagctgcatttgatgaggtctttcagcatgcaaacttcaatacttttgtcttccggaac
cgagtgaagatggagacctacaatgatgaatctcgcatcaaagtgacagtggtggatgcc
aagccggttgaccaccgagaatacagcaaacggctgatcatcaacataaggaagttggct
gcacagtag
DBGET
integrated database retrieval system
