Sinocyclocheilus rhinocerous: 107744933
Help
Entry
107744933 CDS
T04916
Name
(RefSeq) fibril-forming collagen alpha chain-like
KO
K08127
epiphycan
Organism
srx
Sinocyclocheilus rhinocerous
Brite
KEGG Orthology (KO) [BR:
srx00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
srx00535
]
107744933
Proteoglycans [BR:
srx00535
]
Extracellular matrix (ECM) proteoglycans
Small leucine-rich proteoglycan (SLRP) family
class III
107744933
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LRR_8
LRR_4
LRR_5
Collagen
LRR_9
LRRNT
Motif
Other DBs
NCBI-GeneID:
107744933
NCBI-ProteinID:
XP_016414250
LinkDB
All DBs
Position
Unknown
AA seq
683 aa
AA seq
DB search
MVTLRLMWGLLVLCVVAASPRRYTRQAELDNYDNNNVDLDLNVDGDDVYDYYDGIDEPQI
EIGTLSPDEDIDPSHHASLEEEEEEEVEHEERTVEGREDKELPIKPQLIPSGSGESGTLM
GPSAQGEEELRLTPIDILQISGDFSGSGDLGSGDLLHDKDSGSGEPLGSGGSGASGDISG
SVESEDLGSGVSGLSGSGIILISGGEEELHLTLETIPHEASGDFGESGISWVSGASGLPE
LSGEPSASGVLEISGEPVASGVLEVSGEPGASGVPELSGESGASGVPEVSGEPGVSGVSE
VSGESGVPEVSGEPGASGVPEMSGESGLSGVPDVSGESGTSGVPEVSGESGISGVNEVSG
ESGISGLNEVSGEPVISVLPEFPGKSGNFDLFGESGVPEETKQPEVTFESGESGSPEESG
VTEAPDVTTEILIPDLDEEEEILLTTPTTPLEGTGGDIGSGVRDIDKDIDTDTTGMATCM
LCTCLVGSVYCDDLKLDRVPPLSKETTHFYARYNKIARISKSDFANLNKLNRIDLTSNGI
SRIDDDAFFGLPALEELILRENSIRQLPALPPSMTLIDASHNQLGSTGIQREAFKDMPGL
LYLYLTDNNIDHIPVPLPDSLRSLHLQNNNIQMMHEDTFCNPHDLNYIRNALEDVRLDGN
PINLSRTPQAYICLPRIPVGALI
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atggtaacgctgaggttgatgtggggactcctggtcctgtgtgtggtggcagcctctccc
cgcagatacacccgacaagcagaactagataactatgacaacaacaatgtggatttagac
ctgaatgtggatggtgatgatgtctatgactattacgatggaattgatgaaccacagata
gagattggcaccttgagccctgatgaggatattgatccttcacatcatgcctcattggag
gaggaagaagaggaggaggtggagcatgaagaacggacagttgaggggagagaagacaag
gaattacccataaagcctcagcttattccatcaggctctggggagtcagggactctgatg
ggccctagtgcacagggagaggaggagcttcgtctgacgcccattgacatccttcagatt
tctggggacttttcgggttctggtgacttgggctctggagacttacttcatgacaaagat
tccggttctggagagcctttgggctctggaggttctggggcctctggtgacatatcaggt
tctgtggagtcagaggaccttggttctggagtctctgggctttctggttcaggcataata
ttgatctcaggtggagaggaggagctccacttgacgcttgaaaccattccacacgaggcc
tctggggattttggggagtctggaatctcttgggtgtctggagcttctgggttacctgag
ctgtcaggagagccttcagcctctggggttcttgagatatctggagagcctgtggcttct
ggggtacttgaggtatcaggagaacctggggcctctggagtacctgagctgtcaggagag
tctggggcatctggggtacctgaggtgtcaggagaacctggggtctctggggtatctgag
gtgtcaggagaatctggggttccagaggtttcaggagagcctggggcctctggcgtacct
gaaatgtcaggcgagtctgggctctctggggtgccagacgtatcgggagagtctgggacc
tccggggtgcctgaggtgtctggagagtctgggatctctggggtgaatgaggtgtctgga
gagtctgggatctctgggttgaatgaggtgtctggagagcctgtgatctctgtgctgcct
gagttccctggaaagtctggaaactttgatttgtttggagagtctggggtccccgaggag
actaaacagcccgaggtcactttcgagtcaggagagtctgggagcccagaagagtctggg
gtgactgaggccccagacgtcaccactgaaatattaatacctgacttagatgaagaggag
gagatactcctaactaccccgaccactcccttggaggggactgggggtgatatagggtca
ggggtacgtgatattgacaaagatattgacacagatacaacaggtatggccacctgtatg
ctctgcacctgcctggttggatctgtgtactgtgatgaccttaagttggaccgtgttcct
cctctctccaaagaaaccactcatttctatgcccgctacaacaaaattgctaggatcagc
aagtctgacttcgccaacctgaataaattaaataggatcgatctgactagcaatggcatt
tccaggattgatgatgatgctttctttggccttcctgctctggaggagttgatattacga
gagaatagtattagacaacttcctgctctgccaccctctatgacccttattgatgcctct
cacaaccagctgggcagcactggcattcagagagaagctttcaaggacatgccagggcta
ctttacctttatttgacagacaacaacatagaccacatcccagttcctttgcctgacagt
ctgcgctctctgcacctacagaataacaatatccaaatgatgcacgaggacaccttctgc
aatccgcatgacttgaattacatccgcaacgctcttgaggatgttcgcctggacggtaat
cccatcaacctcagcagaaccccacaggcctacatatgtttgccacgtatccctgttggt
gcccttatttaa
DBGET
integrated database retrieval system
