Sinocyclocheilus rhinocerous: 107748741
Help
Entry
107748741 CDS
T04916
Name
(RefSeq) probable ATP-dependent RNA helicase ddx6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
srx
Sinocyclocheilus rhinocerous
Pathway
srx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
srx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107748741
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
srx03019
]
107748741
03036 Chromosome and associated proteins [BR:
srx03036
]
107748741
Enzymes [BR:
srx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
107748741
Messenger RNA biogenesis [BR:
srx03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
107748741
mRNA degradation factors
5'-3' decay
Decapping complex
107748741
Chromosome and associated proteins [BR:
srx03036
]
Eukaryotic type
Gene silencing
piRNA pathway
107748741
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Helicase_C
DEAD
CMS1
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
107748741
NCBI-ProteinID:
XP_016419168
LinkDB
All DBs
Position
Unknown
AA seq
331 aa
AA seq
DB search
MDSSIVIVPTRELALQVSQISIQISKHLGGVKVMATTGGTNLRDDIMRLDEEVHVVIATP
GRILDLIKKGIAKVDKVQMMVMDEADKLLSQDFVVIIEDIIGFLSKNRQILLYSATFPIS
VQKFMAKHLQKPYEINLMEELTLKGITQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNS
TQRVELLAKKITQLGYSCFYIHAKMMQEYRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAV
NVVINFDFPRNAETYLHRIGRSGRFGHLGLAINLISAEDRFNLKTTEDQLMTDIKPIPGS
IDKSLYVAEFHSVNPDCEAEAPQPGEGSEAQ
NT seq
996 nt
NT seq
+upstream
nt +downstream
nt
atggactcgtccattgtgatagttcccacacgtgaactggctctgcaggtcagtcagatc
agtattcagatcagcaagcacctgggtggtgtcaaggtcatggcaaccacaggtgggacc
aacctacgagatgatatcatgcggctggatgaggaggttcatgttgttatagcaacacct
ggcagaattttggacttgataaaaaagggcatagccaaagtggataaagtgcagatgatg
gttatggatgaagctgataagctgctctctcaggactttgtggttattattgaggacatc
attggtttcctttcaaagaacagacagattctgctctattcagccacattccccatcagc
gtacagaagtttatggcaaagcacctgcagaagccctatgagattaatctgatggaggaa
ctgaccctgaaaggcattactcagtactatgcttatgtcacagaaagacagaaagtccac
tgccttaacacactgttctccaggttgcagataaatcagtccattatcttttgtaactct
actcagcgagtggagcttttggccaagaagatcacgcagctgggctactcctgcttctac
attcatgcgaagatgatgcaggaatacagaaaccgtgttttccacgacttcagaaacggg
ctctgcaggaaccttgtttgcacagatttattcactagaggcattgatatccaggcagta
aatgtggtcatcaactttgactttcccaggaatgcagaaacatacctgcatcgcatcgga
cgctcaggcaggtttggacatctgggtttggcaatcaatctcatttccgctgaggatcgc
tttaacctgaagaccactgaggaccagctgatgacggacataaagcccattcctggcagc
attgataagagcctgtatgtggcagagtttcactctgtgaaccctgactgtgaggcagag
gcacctcagcccggcgaagggtctgaagctcagtag
DBGET
integrated database retrieval system
