Sinocyclocheilus rhinocerous: 107750374
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Entry
107750374 CDS
T04916
Name
(RefSeq) polyribonucleotide 5'-hydroxyl-kinase Clp1
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
srx
Sinocyclocheilus rhinocerous
Pathway
srx03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
srx00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
107750374
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
srx03019
]
107750374
Enzymes [BR:
srx01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
107750374
Messenger RNA biogenesis [BR:
srx03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
107750374
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CLP1_P
CLP1_N
Clp1
ATP_bind_1
CbiA
AAA_18
AAA_16
TniB
AAA_22
SRP54
nSTAND3
PduV-EutP
MMR_HSR1
Motif
Other DBs
NCBI-GeneID:
107750374
NCBI-ProteinID:
XP_016421226
UniProt:
A0A673K512
LinkDB
All DBs
Position
Unknown
AA seq
445 aa
AA seq
DB search
MTAEASEKSAEEGMSSSGSAGTSGTRFDLEKETELRFEVEAGERVQLELLSGLAEVFGSE
LNRNKKYTFGPGSKIAVFTWQGCSVSLSGKTEVAYISKDTPMLLYLNTHAALEQMRRQAG
KDNERGPRVMVVGPTDVGKTTVCRVLLNYAVRLGRRPTLVELDVGQSSVSVPGTMSALCI
ERPADVEEGFSVQAPLVFHFGSTTPGTNIKLYNKLTSSLAEVFSQRCEVNRRASVGGCII
NTCGWVKGSGYQALVHCASAFQVDVVLVLDQERLYNELKRDLPHFVRVVLLPKSGGVVER
SKDCRRESRDEKIREYFYGFRGTSFYPHAFDVRFSDVRIYKIGAPSIPDSCLPLGMSQDD
TQLKLVPVSPGRDLTHHVLSVSSVDDDAEVGAGQSRGILESPVCGFIVVTAVDTQAQVMT
VLSPAPRPLPRHTLLIMDIRFIDLK
NT seq
1338 nt
NT seq
+upstream
nt +downstream
nt
atgactgcagaagcctcagaaaagtcagcggaggagggcatgagttcgtcgggcagcgct
ggcacttcaggtacgcgatttgacctggagaaagagacagaactgcgctttgaggtcgaa
gcaggagaacgagtccagctcgagctgttgtccggtctggcagaggtgttcggatccgaa
ctgaaccgaaataagaagtacacttttgggccaggctctaagattgctgtgttcacctgg
caaggctgcagtgtgtcgctgtcaggcaagacggaggtggcttatatctccaaagataca
cccatgctgctgtatctcaacacccatgcagctctggagcagatgagacgtcaggcaggg
aaagacaatgagagaggccctcgggtaatggttgtcggaccaactgatgtgggaaagaca
acagtttgtcgagtgttgctgaactatgctgtgcgactgggacgaaggcctacgctggta
gaactggatgtcggccagagcagcgtctctgtgcctggaactatgtcagctctgtgcatc
gagcgtcctgctgatgtagaagaaggtttctctgtgcaggctccgcttgtctttcacttt
ggctctaccacaccaggaacaaacatcaaactttacaacaagctgacttccagccttgca
gaagtgttttctcagcgctgtgaggtgaaccgcagggctagtgtgggtggctgtataatc
aacacctgtggctgggtcaaaggttcaggctaccaggctctggtccactgcgcttcagct
ttccaggtggatgttgtgctagtcctggaccaggagcgtctctataatgagcttaaacgt
gacctgccacactttgtacgtgtcgtccttctgccaaagtccggcggtgtggtggagcgc
tccaaggactgccgacgagagtcacgggacgaaaagatccgggaatacttctacggcttc
cgtggaacttccttttaccctcatgcttttgatgtgcgcttttcagatgtgcgtatttac
aagatcggtgcaccctcaattccagactcctgtctccctctgggtatgtcccaggacgac
acccagctcaaactcgtgccagtcagccctggcagggatttaacccaccatgtgctgagt
gtgagttcggtggatgatgatgccgaggtgggtgcaggacagagcagagggattttagag
agtcccgtgtgtggtttcatagttgtgacagcagtggacacacaagctcaggtgatgacg
gttctttcaccagcacccagacccctgccgcgacacactctgctcatcatggacattcgt
ttcatcgaccttaaatag
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