KEGG   Sinocyclocheilus rhinocerous: 107752444
Entry
107752444         CDS       T04916                                 
Name
(RefSeq) DNA excision repair protein ERCC-8-like isoform X1
  KO
K10570  DNA excision repair protein ERCC-8
Organism
srx  Sinocyclocheilus rhinocerous
Pathway
srx03420  Nucleotide excision repair
srx04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:srx00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    107752444
  09124 Replication and repair
   03420 Nucleotide excision repair
    107752444
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:srx04121]
    107752444
   03400 DNA repair and recombination proteins [BR:srx03400]
    107752444
Ubiquitin system [BR:srx04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     107752444
DNA repair and recombination proteins [BR:srx03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      107752444
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd Beta-prop_EML_2 EIF3I Beta-prop_RIG_2nd Beta-prop_CAF1B_HIR1 Beta-prop_WDR75_1st Beta-prop_EIPR1 WDR55 Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_C ANAPC4_WD40 Beta-prop_EML NBCH_WD40 WDR90_beta-prop_4th WD_LRWD1 Beta-prop_IFT122_1st Beta-prop_WDR75_2nd Beta-prop_WDR35_TULP_N Beta-prop_RIG_1st Beta-prop_SCAP Beta-prop_IFT140_1st Beta-prop_WDR19_1st Beta-prop_IFT140_2nd Nucleoporin_N Cytochrom_D1
Other DBs
NCBI-GeneID: 107752444
NCBI-ProteinID: XP_016423895
LinkDB
Position
Unknown
AA seq 408 aa
MLSFLYARQSGLDDPVRLRRAESTRRVLSLELNHNRDVDRIHGNGINTLDIEVIDGRYML
SGGSDGVIVIYDLENNSKKPQYTCKAICTVGRSSRHVHKFSVETVQWYPHDTGMFVSSSF
DKTLKVWDTETLKPAEEFQFDGNVYCHHMSPIARKHSLVAALLCSVLAVGTKDPKEQLCD
LKSGSRIHILQGHRGEILSVRWSPRYEHILATASTDSRVRVWDVRRASGSLFTLDQHNGD
KSKASSEAVNTAHNGRVNGLCFTADGLHLLTTGTDDRMRLWNSATGENTLVNYGKVVNES
RKGLRFTVSRGCSPEFVFVPCGSSVAVYGLHSGELITMLRGHYNNVDCCEFHPDYQELYS
GGKDCNVLAWVPVLRQPDIEDDETNSKRGEAQATINPAFEDAWSSDED
NT seq 1227 nt   +upstreamnt  +downstreamnt
atgctaagttttctttatgccaggcaatcagggcttgacgacccagttcgtctgagacgt
gcagagtctacaagaagggtgctgagtctggagttgaaccacaacagagatgttgatcgt
attcatggcaatggaattaacaccctggacattgaggtgattgatggaagatatatgttg
tcaggtggatctgatggcgtaattgtgatctatgacttggaaaacaacagcaagaagcct
caatacacttgcaaagcaatctgcacagtgggcaggtccagtcggcatgtgcataaattc
agcgttgaaacagtgcagtggtatccgcatgacactggtatgtttgtatccagttcattc
gacaaaaccttgaaagtctgggacacagaaaccctgaagccagctgaggagttccagttt
gatggtaatgtctactgtcatcacatgtctcctatagccaggaagcacagtcttgtagca
gctctattgtgctctgtgttggcagttggtaccaaagaccccaaagagcagctttgtgat
ctgaagtctgggtcgcgcatccacatccttcagggtcacaggggcgagatcctctcagtg
agatggtctccacgatacgagcacatcctggccaccgccagcactgacagtagggttcgt
gtctgggatgtgagaagagcctcggggagtctttttactttggaccagcacaatggggac
aaatccaaggcctcatctgaagcagtgaacacagcacacaatgggcgagtgaatggattg
tgcttcacagctgacggacttcatctcctcactactgggacagatgatcgcatgcgcctg
tggaacagtgccacaggggaaaacacattagtgaactatgggaaagtcgtgaatgagagt
cgcaaaggcctcagatttaccgtatcgaggggctgcagtccggagtttgtgtttgtgcca
tgtggcagttcggtagcggtgtacgggcttcactcgggagagctgatcactatgttgagg
ggacattataataacgtagactgctgtgagttccacccagactatcaggagctgtacagt
ggaggtaaagactgtaacgtcctggcctgggtcccagtgctgagacagcctgacattgag
gatgatgaaaccaactctaaaaggggtgaagcacaagctactatcaatcctgcttttgaa
gatgcctggagcagtgatgaagactga

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